Aniseed - Gene card

Gene 'Cisavi.CG.ENS81.R2.1...'

Gene Card

Best human hits

SDHB

Species

C.savignyi

Unique Gene ID

Cisavi.g00004079

Gene Model ID

Cisavi.CG.ENS81.R2.1347827-1356235

Location

R2:1347826..1356235

Transcript Models and Sequences

Cisavi.CG.ENS81.R2.1347827-1356235.11850.t
Cisavi.CG.ENS81.R2.1347827-1356235.11851.t
Cisavi.CG.ENS81.R2.1347827-1356235.11852.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term	Analysis	Definition
4Fe4S_Fe_S_CS	ProSitePatterns	4Fe-4S ferredoxin, iron-sulphur binding, conserved site
Succ_DH/fum_Rdtase_Fe-S	TIGRFAM	Succinate dehydrogenase/fumarate reductase iron-sulphur protein
Succ_DH/fum_Rdtase_N	Pfam	Succinate dehydogenase/fumarate reductase N-terminal
Helical_ferredxn	Gene3D	Alpha-helical ferredoxin
Helical_ferredxn	SUPERFAMILY	Alpha-helical ferredoxin
4Fe4S_Fe-S-bd	ProSiteProfiles	4Fe-4S ferredoxin-type, iron-sulphur binding domain
Beta-grasp_dom_sf	Gene3D	Beta-grasp domain superfamily
2Fe-2S_ferredoxin-like_sf	SUPERFAMILY	2Fe-2S ferredoxin-like superfamily

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

25 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
protein binding	Hs	molecular function
nucleoplasm	Hs	cellular component
mitochondrion	Hs	cellular component
mitochondrial inner membrane	Hs	cellular component
mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	Hs	cellular component
plasma membrane	Hs	cellular component
tricarboxylic acid cycle	Hs	biological process
succinate metabolic process	Hs	biological process
succinate dehydrogenase (ubiquinone) activity	Hs	molecular function
electron carrier activity	Hs	molecular function
aerobic respiration	Hs	biological process
membrane	Hs	cellular component
oxidoreductase activity	Hs	molecular function
electron transport chain	Hs	biological process
respiratory electron transport chain	Hs	biological process
mitochondrial membrane	Hs	cellular component
respiratory chain complex II	Hs	cellular component
metal ion binding	Hs	molecular function
ubiquinone binding	Hs	molecular function
iron-sulfur cluster binding	Hs	molecular function
2 iron, 2 sulfur cluster binding	Hs	molecular function
3 iron, 4 sulfur cluster binding	Hs	molecular function
4 iron, 4 sulfur cluster binding	Hs	molecular function
oxidation-reduction process	Hs	biological process
extracellular exosome	Hs	cellular component

GO (Blast)

19 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
protein binding	Hs	molecular function	394	2.03e-139
nucleoplasm	Hs	cellular component	394	2.03e-139
mitochondrion	Hs	cellular component	394	2.03e-139
mitochondrial inner membrane	Hs	cellular component	394	2.03e-139
mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	Hs	cellular component	394	2.03e-139
plasma membrane	Hs	cellular component	394	2.03e-139
succinate dehydrogenase (ubiquinone) activity	Hs	molecular function	394	2.03e-139
electron carrier activity	Hs	molecular function	394	2.03e-139
membrane	Hs	cellular component	394	2.03e-139
oxidoreductase activity	Hs	molecular function	394	2.03e-139
mitochondrial membrane	Hs	cellular component	394	2.03e-139
respiratory chain complex II	Hs	cellular component	394	2.03e-139
metal ion binding	Hs	molecular function	394	2.03e-139
ubiquinone binding	Hs	molecular function	394	2.03e-139
iron-sulfur cluster binding	Hs	molecular function	394	2.03e-139
2 iron, 2 sulfur cluster binding	Hs	molecular function	394	2.03e-139
3 iron, 4 sulfur cluster binding	Hs	molecular function	394	2.03e-139
4 iron, 4 sulfur cluster binding	Hs	molecular function	394	2.03e-139
extracellular exosome	Hs	cellular component	394	2.03e-139

GO (InterProScan)

5 results

GO Term	Analysis	Type	e-value
tricarboxylic acid cycle	TIGRFAM	biological process	1.7E-77
electron carrier activity	Pfam	molecular function	6.9E-25
oxidoreductase activity	TIGRFAM	molecular function	1.7E-77
iron-sulfur cluster binding	Gene3D	molecular function	9.4E-61
oxidation-reduction process	TIGRFAM	biological process	1.7E-77