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GENE CARD

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Gene Card

Best human hits

LARP4; LARP6; LARP7

Species

C.savignyi

Unique Gene ID

Cisavi.g00003438

Gene Model ID

Cisavi.CG.ENS81.R17.735735-737822

Location

R17:735734..737822

Transcript Models and Sequences

  Cisavi.CG.ENS81.R17.735735-737822.09729.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
La_HTH ProSiteProfiles La-type HTH domain
La_HTH Pfam La-type HTH domain
La_HTH SMART La-type HTH domain
WH-like_DNA-bd_sf Gene3D Winged helix-like DNA-binding domain superfamily
WH_DNA-bd_sf SUPERFAMILY Winged helix DNA-binding domain superfamily

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

17 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleic acid binding Hs molecular function 85.1 1.50e-19
RNA binding Hs molecular function 85.1 1.50e-19
protein binding Hs molecular function 85.1 1.50e-19
nucleus Hs cellular component 85.1 1.50e-19
nucleoplasm Hs cellular component 55.5 2.49e-09
cytoplasm Hs cellular component 85.1 1.50e-19
cytosol Hs cellular component 55.5 2.49e-09
polysome Hs cellular component 85.1 1.50e-19
poly(A) binding Hs molecular function 52.4 3.53e-08
cytoplasmic stress granule Hs cellular component 52.4 3.53e-08
membrane Hs cellular component 52.4 3.53e-08
myosin binding Hs molecular function 85.1 1.50e-19
cytosolic small ribosomal subunit Hs cellular component 52.4 3.53e-08
intracellular ribonucleoprotein complex Hs cellular component 85.1 1.50e-19
RNA stem-loop binding Hs molecular function 85.1 1.50e-19
mRNA 5'-UTR binding Hs molecular function 85.1 1.50e-19
sequence-specific mRNA binding Hs molecular function 85.1 1.50e-19

GO (InterProScan)

No result

GO Term Analysis Type e-value