Aniseed - Gene card

Gene 'Moocci.CG.ELv1_2.S56...' >

Gene Card

Best human hits

TBX2; TBX4; TBX6

Species

C.savignyi

Unique Gene ID

Cisavi.g00003119

Gene Model ID

Cisavi.CG.ENS81.R16.5007579-5011081

Location

R16:5007578..5011081

Transcript Models and Sequences

Cisavi.CG.ENS81.R16.5007579-5011081.20041.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term	Analysis	Definition
TF_T-box	PRINTS	Transcription factor, T-box
TF_T-box	PANTHER	Transcription factor, T-box
TF_T-box	Pfam	Transcription factor, T-box
TF_T-box	CDD	Transcription factor, T-box
p53-like_TF_DNA-bd	SUPERFAMILY	p53-like transcription factor, DNA-binding
TF_T-box	ProSiteProfiles	Transcription factor, T-box
TF_T-box_CS	ProSitePatterns	Transcription factor, T-box, conserved site
T-box_sf	Gene3D	T-box superfamily
TF_T-box	SMART	Transcription factor, T-box

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	237	4.82e-70
RNA polymerase II distal enhancer sequence-specific DNA binding	Hs	molecular function	229	1.00e-69
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	237	4.82e-70
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	237	4.82e-70
RNA polymerase II transcription factor binding	Hs	molecular function	229	1.00e-69
RNA polymerase II activating transcription factor binding	Hs	molecular function	229	1.00e-69
transcriptional repressor activity, RNA polymerase II transcription factor binding	Hs	molecular function	229	1.00e-69
DNA binding	Hs	molecular function	237	4.82e-70
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	237	4.82e-70
protein binding	Hs	molecular function	237	4.82e-70
nucleus	Hs	cellular component	237	4.82e-70
transcription factor complex	Hs	cellular component	237	4.82e-70
sequence-specific DNA binding	Hs	molecular function	237	4.82e-70

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
transcription factor activity, sequence-specific DNA binding	PANTHER	molecular function	3.2E-127
nucleus	PANTHER	cellular component	3.2E-127
regulation of transcription, DNA-templated	PANTHER	biological process	3.2E-127