Aniseed - Gene card

Gene Card

Best human hits

RARA; RARB; RARG

Species

C.savignyi

Unique Gene ID

Cisavi.g00001930

Gene Model ID

Cisavi.CG.ENS81.R132.1916071-1942947

Location

R132:1916070..1942947

Transcript Models and Sequences

Cisavi.CG.ENS81.R132.1916071-1942947.11717.t
Cisavi.CG.ENS81.R132.1916071-1942947.11718.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

11 results

IPR Term	Analysis	Definition
Znf_NHR/GATA	Gene3D	Zinc finger, NHR/GATA-type
Nucl_hrmn_rcpt_lig-bd	Pfam	Nuclear hormone receptor, ligand-binding domain
NHR_like_dom_sf	SUPERFAMILY	Nuclear hormone receptor-like domain superfamily
Znf_hrmn_rcpt	ProSiteProfiles	Zinc finger, nuclear hormone receptor-type
Nucl_hrmn_rcpt_lig-bd	SMART	Nuclear hormone receptor, ligand-binding domain
Nuclear_hrmn_rcpt	PRINTS	Nuclear hormone receptor
Retinoic_acid_rcpt	PRINTS	Retinoic acid receptor
Znf_hrmn_rcpt	Pfam	Zinc finger, nuclear hormone receptor-type
Znf_hrmn_rcpt	ProSitePatterns	Zinc finger, nuclear hormone receptor-type
Znf_hrmn_rcpt	SMART	Zinc finger, nuclear hormone receptor-type
Znf_hrmn_rcpt	PRINTS	Zinc finger, nuclear hormone receptor-type

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

106 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
nuclear chromatin	Hs	cellular component
translation repressor activity, nucleic acid binding	Hs	molecular function
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
RNA polymerase II regulatory region DNA binding	Hs	molecular function
ureteric bud development	Hs	biological process
neural tube closure	Hs	biological process
liver development	Hs	biological process
retinoic acid binding	Hs	molecular function
chondrocyte development	Hs	biological process
retinal pigment epithelium development	Hs	biological process
DNA binding	Hs	molecular function
transcription factor activity, sequence-specific DNA binding	Hs	molecular function
steroid hormone receptor activity	Hs	molecular function
retinoic acid receptor activity	Hs	molecular function
transcription coactivator activity	Hs	molecular function
transcription corepressor activity	Hs	molecular function
nuclear receptor activity	Hs	molecular function
receptor binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
transcription factor complex	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
transcription initiation from RNA polymerase II promoter	Hs	biological process
protein phosphorylation	Hs	biological process
signal transduction	Hs	biological process
germ cell development	Hs	biological process
spermatogenesis	Hs	biological process
transcription factor binding	Hs	molecular function
drug binding	Hs	molecular function
zinc ion binding	Hs	molecular function
positive regulation of cell proliferation	Hs	biological process
negative regulation of cell proliferation	Hs	biological process
regulation of cell size	Hs	biological process
male gonad development	Hs	biological process
anterior/posterior pattern specification	Hs	biological process
cell surface	Hs	cellular component
regulation of gene expression	Hs	biological process
positive regulation of gene expression	Hs	biological process
negative regulation of gene expression	Hs	biological process
actin cytoskeleton	Hs	cellular component
integral component of membrane	Hs	cellular component
negative regulation of translation	Hs	biological process
enzyme binding	Hs	molecular function
protein domain specific binding	Hs	molecular function
neurogenesis	Hs	biological process
dendrite	Hs	cellular component
embryonic camera-type eye development	Hs	biological process
chromatin DNA binding	Hs	molecular function
regulation of myelination	Hs	biological process
response to estradiol	Hs	biological process
response to retinoic acid	Hs	biological process
response to cytokine	Hs	biological process
embryonic hindlimb morphogenesis	Hs	biological process
multicellular organism growth	Hs	biological process
histone deacetylase binding	Hs	molecular function
regulation of apoptotic process	Hs	biological process
neuron projection	Hs	cellular component
camera-type eye development	Hs	biological process
neuronal cell body	Hs	cellular component
positive regulation of apoptotic process	Hs	biological process
negative regulation of apoptotic process	Hs	biological process
positive regulation of programmed cell death	Hs	biological process
apoptotic cell clearance	Hs	biological process
steroid hormone mediated signaling pathway	Hs	biological process
protein kinase B binding	Hs	molecular function
sequence-specific DNA binding	Hs	molecular function
transcription regulatory region DNA binding	Hs	molecular function
retinoic acid-responsive element binding	Hs	molecular function
response to ethanol	Hs	biological process
negative regulation of cell differentiation	Hs	biological process
regulation of myeloid cell differentiation	Hs	biological process
positive regulation of neuron differentiation	Hs	biological process
positive regulation of cell cycle	Hs	biological process
negative regulation of transcription, DNA-templated	Hs	biological process
positive regulation of transcription, DNA-templated	Hs	biological process
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
negative regulation of translational initiation	Hs	biological process
metal ion binding	Hs	molecular function
retinoid X receptor binding	Hs	molecular function
protein heterodimerization activity	Hs	molecular function
mRNA 5'-UTR binding	Hs	molecular function
embryonic eye morphogenesis	Hs	biological process
regulation of synaptic plasticity	Hs	biological process
retinoic acid receptor signaling pathway	Hs	biological process
perinuclear region of cytoplasm	Hs	cellular component
embryonic digestive tract development	Hs	biological process
reproductive structure development	Hs	biological process
protein kinase A binding	Hs	molecular function
alpha-actinin binding	Hs	molecular function
ventricular cardiac muscle cell differentiation	Hs	biological process
retina development in camera-type eye	Hs	biological process
canonical Wnt signaling pathway	Hs	biological process
limb development	Hs	biological process
face development	Hs	biological process
bone development	Hs	biological process
bone morphogenesis	Hs	biological process
epithelium development	Hs	biological process
cellular response to lipopolysaccharide	Hs	biological process
cellular response to retinoic acid	Hs	biological process
cellular response to estrogen stimulus	Hs	biological process

GO (Blast)

44 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nuclear chromatin	Hs	cellular component	446	2.59e-152
translation repressor activity, nucleic acid binding	Hs	molecular function	446	2.59e-152
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function	449	1.25e-153
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	449	1.25e-153
RNA polymerase II regulatory region DNA binding	Hs	molecular function	446	2.59e-152
retinoic acid binding	Hs	molecular function	446	2.59e-152
DNA binding	Hs	molecular function	449	1.25e-153
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	449	1.25e-153
steroid hormone receptor activity	Hs	molecular function	449	1.25e-153
retinoic acid receptor activity	Hs	molecular function	449	1.25e-153
transcription coactivator activity	Hs	molecular function	446	2.59e-152
transcription corepressor activity	Hs	molecular function	446	2.59e-152
nuclear receptor activity	Hs	molecular function	446	2.59e-152
receptor binding	Hs	molecular function	446	2.59e-152
protein binding	Hs	molecular function	446	2.59e-152
nucleus	Hs	cellular component	449	1.25e-153
nucleoplasm	Hs	cellular component	449	1.25e-153
transcription factor complex	Hs	cellular component	420	2.04e-142
cytoplasm	Hs	cellular component	449	1.25e-153
cytosol	Hs	cellular component	446	2.59e-152
transcription factor binding	Hs	molecular function	446	2.59e-152
drug binding	Hs	molecular function	449	1.25e-153
zinc ion binding	Hs	molecular function	449	1.25e-153
cell surface	Hs	cellular component	446	2.59e-152
actin cytoskeleton	Hs	cellular component	446	2.59e-152
integral component of membrane	Hs	cellular component	420	2.04e-142
enzyme binding	Hs	molecular function	446	2.59e-152
protein domain specific binding	Hs	molecular function	446	2.59e-152
dendrite	Hs	cellular component	446	2.59e-152
chromatin DNA binding	Hs	molecular function	446	2.59e-152
histone deacetylase binding	Hs	molecular function	446	2.59e-152
neuron projection	Hs	cellular component	446	2.59e-152
neuronal cell body	Hs	cellular component	446	2.59e-152
protein kinase B binding	Hs	molecular function	446	2.59e-152
sequence-specific DNA binding	Hs	molecular function	449	1.25e-153
transcription regulatory region DNA binding	Hs	molecular function	446	2.59e-152
retinoic acid-responsive element binding	Hs	molecular function	446	2.59e-152
metal ion binding	Hs	molecular function	449	1.25e-153
retinoid X receptor binding	Hs	molecular function	449	1.25e-153
protein heterodimerization activity	Hs	molecular function	446	2.59e-152
mRNA 5'-UTR binding	Hs	molecular function	446	2.59e-152
perinuclear region of cytoplasm	Hs	cellular component	446	2.59e-152
protein kinase A binding	Hs	molecular function	446	2.59e-152
alpha-actinin binding	Hs	molecular function	446	2.59e-152

GO (InterProScan)

10 results

GO Term	Analysis	Type	e-value
DNA binding	PRINTS	molecular function	4.7E-39
transcription factor activity, sequence-specific DNA binding	SMART	molecular function	9.0E-40
steroid hormone receptor activity	PRINTS	molecular function	2.2E-27
retinoic acid receptor activity	PRINTS	molecular function	4.7E-39
nucleus	SMART	cellular component	9.0E-40
regulation of transcription, DNA-templated	SMART	biological process	9.0E-40
zinc ion binding	SMART	molecular function	9.0E-40
steroid hormone mediated signaling pathway	SMART	biological process	3.5E-32
sequence-specific DNA binding	SMART	molecular function	9.0E-40
retinoic acid receptor signaling pathway	PRINTS	biological process	4.7E-39