Aniseed - Gene card

Gene 'Cisavi.CG.ENS81.R130...'

Gene Card

Best human hits

FOXA2; FOXB1; FOXB2

Species

C.savignyi

Unique Gene ID

Cisavi.g00001842

Gene Model ID

Cisavi.CG.ENS81.R130.24911-26271

Location

R130:24910..26271

Transcript Models and Sequences

Cisavi.CG.ENS81.R130.24911-26271.04409.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term	Analysis	Definition
TF_fork_head_CS_1	ProSitePatterns	Fork head domain conserved site1
Fork_head_dom	PRINTS	Fork head domain
TF_fork_head_CS_2	ProSitePatterns	Fork head domain conserved site 2
Fork_head_dom	SMART	Fork head domain
WH_DNA-bd_sf	SUPERFAMILY	Winged helix DNA-binding domain superfamily
WH-like_DNA-bd_sf	Gene3D	Winged helix-like DNA-binding domain superfamily
Fork_head_dom	Pfam	Fork head domain
Fork_head_dom	ProSiteProfiles	Fork head domain
Fork_head_dom	CDD	Fork head domain

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

23 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
urogenital system development	Hs	biological process
somitogenesis	Hs	biological process
DNA binding	Hs	molecular function
transcription factor activity, sequence-specific DNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
regulation of transcription from RNA polymerase II promoter	Hs	biological process
axon target recognition	Hs	biological process
visual learning	Hs	biological process
anatomical structure morphogenesis	Hs	biological process
spinal cord development	Hs	biological process
thalamus development	Hs	biological process
hypothalamus cell migration	Hs	biological process
telencephalon cell migration	Hs	biological process
cell differentiation	Hs	biological process
midbrain development	Hs	biological process
floor plate development	Hs	biological process
negative regulation of neuron apoptotic process	Hs	biological process
sequence-specific DNA binding	Hs	molecular function
inferior colliculus development	Hs	biological process

GO (Blast)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	168	2.75e-47
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	207	2.67e-63
DNA binding	Hs	molecular function	207	2.67e-63
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	207	2.67e-63
protein binding	Hs	molecular function	207	2.67e-63
nucleus	Hs	cellular component	207	2.67e-63
nucleoplasm	Hs	cellular component	168	2.75e-47
cytoplasm	Hs	cellular component	168	2.75e-47
transcription factor binding	Hs	molecular function	168	2.75e-47
protein domain specific binding	Hs	molecular function	168	2.75e-47
cell junction	Hs	cellular component	168	2.75e-47
sequence-specific DNA binding	Hs	molecular function	207	2.67e-63
transcription regulatory region DNA binding	Hs	molecular function	168	2.75e-47

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
transcription factor activity, sequence-specific DNA binding	SMART	molecular function	2.5E-53
regulation of transcription, DNA-templated	SMART	biological process	2.5E-53
sequence-specific DNA binding	SMART	molecular function	2.5E-53