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Gene Card

Best human hits

LIN28B; YBX1; YBX2

Species

B.schlosseri

Unique Gene ID

Boschl.g00052297

Gene Model ID

Boschl.CG.Botznik2013.chrUn.g52297

Location

chrUn:320344290..320351824

Transcript Models and Sequences

  Boschl.CG.Botznik2013.chrUn.g52297.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
CSP_DNA-bd PRINTS Cold-shock protein, DNA-binding
CSD SMART Cold shock domain
CSP_DNA-bd Pfam Cold-shock protein, DNA-binding
Cold-shock_CS ProSitePatterns Cold-shock conserved site
CSP_DNA-bd CDD Cold-shock protein, DNA-binding
NA-bd_OB-fold SUPERFAMILY Nucleic acid-binding, OB-fold

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

54 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
negative regulation of transcription from RNA polymerase II promoter Hs biological process
mRNA splicing, via spliceosome Hs biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function
fibrillar center Hs cellular component
nucleic acid binding Hs molecular function
DNA binding Hs molecular function
chromatin binding Hs molecular function
double-stranded DNA binding Hs molecular function
single-stranded DNA binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
RNA binding Hs molecular function
protein binding Hs molecular function
extracellular region Hs cellular component
nucleus Hs cellular component
nucleoplasm Hs cellular component
U12-type spliceosomal complex Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
transcription from RNA polymerase II promoter Hs biological process
mRNA processing Hs biological process
Notch signaling pathway Hs biological process
spermatogenesis Hs biological process
RNA splicing Hs biological process
cytoplasmic stress granule Hs cellular component
intracellular ribonucleoprotein complex Hs cellular component
nuclear membrane Hs cellular component
intracellular membrane-bounded organelle Hs cellular component
positive regulation of transcription from RNA polymerase II promoter Hs biological process
oocyte development Hs biological process
GTPase binding Hs molecular function
positive regulation of cell division Hs biological process
extracellular exosome Hs cellular component
CRD-mediated mRNA stability complex Hs cellular component
histone pre-mRNA 3'end processing complex Hs cellular component
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function
transcription corepressor activity Hs molecular function
mRNA 3'-UTR binding Hs molecular function
polysome Hs cellular component
bicellular tight junction Hs cellular component
male gonad development Hs biological process
response to cold Hs biological process
fertilization Hs biological process
Rho GTPase binding Hs molecular function
negative regulation of apoptotic process Hs biological process
positive regulation of organ growth Hs biological process
perinuclear region of cytoplasm Hs cellular component
3'-UTR-mediated mRNA stabilization Hs biological process
cellular response to tumor necrosis factor Hs biological process
positive regulation of cytoplasmic translation Hs biological process

GO (Blast)

29 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 113 1.64e-28
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 113 1.64e-28
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 113 1.64e-28
fibrillar center Hs cellular component 156 1.11e-44
nucleic acid binding Hs molecular function 156 1.11e-44
DNA binding Hs molecular function 156 1.11e-44
chromatin binding Hs molecular function 113 1.64e-28
double-stranded DNA binding Hs molecular function 113 1.64e-28
single-stranded DNA binding Hs molecular function 113 1.64e-28
transcription factor activity, sequence-specific DNA binding Hs molecular function 113 1.64e-28
RNA binding Hs molecular function 156 1.11e-44
protein binding Hs molecular function 113 1.64e-28
extracellular region Hs cellular component 113 1.64e-28
nucleus Hs cellular component 156 1.11e-44
nucleoplasm Hs cellular component 113 1.64e-28
U12-type spliceosomal complex Hs cellular component 113 1.64e-28
nucleolus Hs cellular component 70.1 6.75e-14
cytoplasm Hs cellular component 156 1.11e-44
cytosol Hs cellular component 113 1.64e-28
zinc ion binding Hs molecular function 70.1 6.75e-14
cytoplasmic stress granule Hs cellular component 113 1.64e-28
intracellular ribonucleoprotein complex Hs cellular component 113 1.64e-28
nuclear membrane Hs cellular component 113 1.64e-28
intracellular membrane-bounded organelle Hs cellular component 113 1.64e-28
metal ion binding Hs molecular function 70.1 6.75e-14
GTPase binding Hs molecular function 113 1.64e-28
extracellular exosome Hs cellular component 113 1.64e-28
CRD-mediated mRNA stability complex Hs cellular component 113 1.64e-28
histone pre-mRNA 3'end processing complex Hs cellular component 113 1.64e-28

GO (InterProScan)

3 results

GO Term Analysis Type e-value
nucleic acid binding SMART molecular function 4.4E-21
DNA binding Pfam molecular function 4.2E-23
regulation of transcription, DNA-templated Pfam biological process 4.2E-23

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