Aniseed - Gene card

Gene Card

Best human hits

NVL; SPATA5; VCP

Species

B.schlosseri

Unique Gene ID

Boschl.g00027348

Gene Model ID

Boschl.CG.Botznik2013.chrUn.g27348

Location

chrUn:178874497..178876897

Transcript Models and Sequences

Boschl.CG.Botznik2013.chrUn.g27348.01.t
Boschl.CG.Botznik2013.chrUn.g27348.02.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

12 results

IPR Term	Analysis	Definition
Vps4_C	Pfam	Vps4 oligomerisation, C-terminal
ATPase_AAA_CS	ProSitePatterns	ATPase, AAA-type, conserved site
Cdc48_dom2	Pfam	CDC48, domain 2
Cdc48_dom2	SMART	CDC48, domain 2
ATPase_AAA_core	Pfam	ATPase, AAA-type, core
CDC4_N-term_subdom	SMART	CDC48, N-terminal subdomain
CDC4_N-term_subdom	Pfam	CDC48, N-terminal subdomain
P-loop_NTPase	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolase
AAA+_ATPase	SMART	AAA+ ATPase domain
AAA_ATPase_CDC48	TIGRFAM	AAA ATPase, CDC48 family
CDC48_domain_2-like_sf	SUPERFAMILY	CDC48 domain 2-like superfamily
Asp_de-COase-like_dom_sf	SUPERFAMILY	Aspartate decarboxylase-like domain superfamily

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

81 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleotide binding	Hs	molecular function
proteasome complex	Hs	cellular component
RNA binding	Hs	molecular function
receptor binding	Hs	molecular function
protein binding	Hs	molecular function
ATP binding	Hs	molecular function
extracellular region	Hs	cellular component
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
endoplasmic reticulum	Hs	cellular component
endoplasmic reticulum membrane	Hs	cellular component
lipid droplet	Hs	cellular component
cytosol	Hs	cellular component
DNA repair	Hs	biological process
double-strand break repair	Hs	biological process
protein folding	Hs	biological process
protein methylation	Hs	biological process
ubiquitin-dependent protein catabolic process	Hs	biological process
NADH metabolic process	Hs	biological process
ER to Golgi vesicle-mediated transport	Hs	biological process
autophagy	Hs	biological process
activation of cysteine-type endopeptidase activity involved in apoptotic process	Hs	biological process
cellular response to DNA damage stimulus	Hs	biological process
lipid binding	Hs	molecular function
proteasomal protein catabolic process	Hs	biological process
positive regulation of mitochondrial membrane potential	Hs	biological process
macroautophagy	Hs	biological process
protein ubiquitination	Hs	biological process
protein deubiquitination	Hs	biological process
hydrolase activity	Hs	molecular function
ATPase activity	Hs	molecular function
protein N-linked glycosylation via asparagine	Hs	biological process
viral genome replication	Hs	biological process
protein phosphatase binding	Hs	molecular function
protein domain specific binding	Hs	molecular function
translesion synthesis	Hs	biological process
ubiquitin-dependent ERAD pathway	Hs	biological process
endoplasmic reticulum unfolded protein response	Hs	biological process
retrograde protein transport, ER to cytosol	Hs	biological process
positive regulation of protein complex assembly	Hs	biological process
polyubiquitin modification-dependent protein binding	Hs	molecular function
ubiquitin protein ligase binding	Hs	molecular function
positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Hs	biological process
endosome to lysosome transport via multivesicular body sorting pathway	Hs	biological process
macromolecular complex	Hs	cellular component
VCP-NPL4-UFD1 AAA ATPase complex	Hs	cellular component
protein hexamerization	Hs	biological process
secretory granule lumen	Hs	cellular component
azurophil granule lumen	Hs	cellular component
deubiquitinase activator activity	Hs	molecular function
site of double-strand break	Hs	cellular component
K48-linked polyubiquitin modification-dependent protein binding	Hs	molecular function
ERAD pathway	Hs	biological process
Derlin-1 retrotranslocation complex	Hs	cellular component
MHC class I protein binding	Hs	molecular function
identical protein binding	Hs	molecular function
regulation of apoptotic process	Hs	biological process
proteasome-mediated ubiquitin-dependent protein catabolic process	Hs	biological process
myelin sheath	Hs	cellular component
intracellular membrane-bounded organelle	Hs	cellular component
ADP binding	Hs	molecular function
ubiquitin-like protein ligase binding	Hs	molecular function
establishment of protein localization	Hs	biological process
positive regulation of protein catabolic process	Hs	biological process
ATP metabolic process	Hs	biological process
perinuclear region of cytoplasm	Hs	cellular component
protein homooligomerization	Hs	biological process
transmembrane transport	Hs	biological process
extracellular exosome	Hs	cellular component
ER-associated misfolded protein catabolic process	Hs	biological process
positive regulation of canonical Wnt signaling pathway	Hs	biological process
autophagosome maturation	Hs	biological process
positive regulation of oxidative phosphorylation	Hs	biological process
BAT3 complex binding	Hs	molecular function
ficolin-1-rich granule lumen	Hs	cellular component
ATPase complex	Hs	cellular component
ubiquitin-specific protease binding	Hs	molecular function
VCP-NSFL1C complex	Hs	cellular component
positive regulation of ubiquitin-specific protease activity	Hs	biological process
positive regulation of ATP biosynthetic process	Hs	biological process

GO (Blast)

47 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleotide binding	Hs	molecular function	1342	0.0
proteasome complex	Hs	cellular component	1342	0.0
RNA binding	Hs	molecular function	1342	0.0
receptor binding	Hs	molecular function	1342	0.0
protein binding	Hs	molecular function	1342	0.0
ATP binding	Hs	molecular function	1342	0.0
extracellular region	Hs	cellular component	1342	0.0
nucleus	Hs	cellular component	1342	0.0
nucleoplasm	Hs	cellular component	1342	0.0
telomerase holoenzyme complex	Hs	cellular component	482	1.08e-152
nucleolus	Hs	cellular component	482	1.08e-152
cytoplasm	Hs	cellular component	1342	0.0
mitochondrion	Hs	cellular component	563	0.0
endoplasmic reticulum	Hs	cellular component	1342	0.0
endoplasmic reticulum membrane	Hs	cellular component	1342	0.0
lipid droplet	Hs	cellular component	1342	0.0
cytosol	Hs	cellular component	1342	0.0
lipid binding	Hs	molecular function	1342	0.0
membrane	Hs	cellular component	482	1.08e-152
hydrolase activity	Hs	molecular function	1342	0.0
ATPase activity	Hs	molecular function	1342	0.0
protein phosphatase binding	Hs	molecular function	1342	0.0
protein domain specific binding	Hs	molecular function	1342	0.0
polyubiquitin modification-dependent protein binding	Hs	molecular function	1342	0.0
ubiquitin protein ligase binding	Hs	molecular function	1342	0.0
macromolecular complex	Hs	cellular component	1342	0.0
VCP-NPL4-UFD1 AAA ATPase complex	Hs	cellular component	1342	0.0
secretory granule lumen	Hs	cellular component	1342	0.0
azurophil granule lumen	Hs	cellular component	1342	0.0
deubiquitinase activator activity	Hs	molecular function	1342	0.0
site of double-strand break	Hs	cellular component	1342	0.0
K48-linked polyubiquitin modification-dependent protein binding	Hs	molecular function	1342	0.0
Derlin-1 retrotranslocation complex	Hs	cellular component	1342	0.0
MHC class I protein binding	Hs	molecular function	1342	0.0
identical protein binding	Hs	molecular function	1342	0.0
myelin sheath	Hs	cellular component	1342	0.0
intracellular membrane-bounded organelle	Hs	cellular component	1342	0.0
ADP binding	Hs	molecular function	1342	0.0
ubiquitin-like protein ligase binding	Hs	molecular function	1342	0.0
perinuclear region of cytoplasm	Hs	cellular component	1342	0.0
extracellular exosome	Hs	cellular component	1342	0.0
BAT3 complex binding	Hs	molecular function	1342	0.0
ficolin-1-rich granule lumen	Hs	cellular component	1342	0.0
ATPase complex	Hs	cellular component	1342	0.0
preribosome binding	Hs	molecular function	482	1.08e-152
ubiquitin-specific protease binding	Hs	molecular function	1342	0.0
VCP-NSFL1C complex	Hs	cellular component	1342	0.0

GO (InterProScan)

2 results

GO Term	Analysis	Type	e-value
ATP binding	Pfam	molecular function	1.2E-46
hydrolase activity	TIGRFAM	molecular function	1.5E-252