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Gene Card

Best human hits

DHX30; DHX57; DHX9

Species

B.schlosseri

Unique Gene ID

Boschl.g00010156

Gene Model ID

Boschl.CG.Botznik2013.chrUn.g10156

Location

chrUn:65554890..65561921

Transcript Models and Sequences

  Boschl.CG.Botznik2013.chrUn.g10156.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term Analysis Definition
dsRBD_dom SMART Double-stranded RNA-binding domain
Helicase_ATP-bd SMART Helicase superfamily 1/2, ATP-binding domain
Helicase_ATP-bd ProSiteProfiles Helicase superfamily 1/2, ATP-binding domain
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
dsRBD_dom ProSiteProfiles Double-stranded RNA-binding domain
DNA/RNA_helicase_DEAH_CS ProSitePatterns DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site
dsRBD_dom Pfam Double-stranded RNA-binding domain
DEAD/DEAH_box_helicase_dom Pfam DEAD/DEAH box helicase domain

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

66 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleotide binding Hs molecular function 657 0.0
RNA polymerase II core binding Hs molecular function 657 0.0
core promoter binding Hs molecular function 657 0.0
regulatory region RNA binding Hs molecular function 657 0.0
RNA polymerase II transcription factor binding Hs molecular function 657 0.0
RNA polymerase II transcription cofactor activity Hs molecular function 657 0.0
RNA polymerase II transcription coactivator activity Hs molecular function 657 0.0
nucleic acid binding Hs molecular function 657 0.0
DNA binding Hs molecular function 657 0.0
chromatin binding Hs molecular function 209 9.55e-58
DNA replication origin binding Hs molecular function 657 0.0
double-stranded DNA binding Hs molecular function 657 0.0
single-stranded DNA binding Hs molecular function 657 0.0
RNA binding Hs molecular function 657 0.0
RNA helicase activity Hs molecular function 657 0.0
double-stranded RNA binding Hs molecular function 657 0.0
single-stranded RNA binding Hs molecular function 657 0.0
mRNA binding Hs molecular function 657 0.0
ATP-dependent DNA helicase activity Hs molecular function 657 0.0
ATP-dependent RNA helicase activity Hs molecular function 657 0.0
helicase activity Hs molecular function 657 0.0
protein binding Hs molecular function 657 0.0
ATP binding Hs molecular function 657 0.0
nucleus Hs cellular component 657 0.0
nucleoplasm Hs cellular component 657 0.0
perichromatin fibrils Hs cellular component 657 0.0
nucleolus Hs cellular component 657 0.0
cytoplasm Hs cellular component 657 0.0
mitochondrion Hs cellular component 209 9.55e-58
centrosome Hs cellular component 657 0.0
microtubule organizing center Hs cellular component 657 0.0
cytosol Hs cellular component 657 0.0
polysome Hs cellular component 657 0.0
cytoskeleton Hs cellular component 657 0.0
actin cytoskeleton Hs cellular component 657 0.0
membrane Hs cellular component 657 0.0
nuclear body Hs cellular component 657 0.0
hydrolase activity Hs molecular function 657 0.0
ATPase activity Hs molecular function 657 0.0
nucleoside-triphosphatase activity Hs molecular function 657 0.0
intracellular ribonucleoprotein complex Hs cellular component 657 0.0
chromatin DNA binding Hs molecular function 657 0.0
macromolecular complex Hs cellular component 657 0.0
ATP-dependent 3'-5' DNA/RNA helicase activity Hs molecular function 657 0.0
ATP-dependent 3'-5' RNA helicase activity Hs molecular function 657 0.0
micro-ribonucleoprotein complex Hs cellular component 657 0.0
siRNA binding Hs molecular function 657 0.0
RNA stem-loop binding Hs molecular function 657 0.0
ribonucleoprotein granule Hs cellular component 209 9.55e-58
cytoplasmic ribonucleoprotein granule Hs cellular component 657 0.0
mitochondrial nucleoid Hs cellular component 209 9.55e-58
polysomal ribosome Hs cellular component 657 0.0
ATP-dependent 3'-5' DNA helicase activity Hs molecular function 657 0.0
triplex DNA binding Hs molecular function 657 0.0
metal ion binding Hs molecular function 657 0.0
nucleoside-triphosphate diphosphatase activity Hs molecular function 657 0.0
importin-alpha family protein binding Hs molecular function 657 0.0
RNA polymerase binding Hs molecular function 657 0.0
RISC-loading complex Hs cellular component 657 0.0
CRD-mediated mRNA stability complex Hs cellular component 657 0.0
nuclear stress granule Hs cellular component 657 0.0
RISC complex binding Hs molecular function 657 0.0
polysome binding Hs molecular function 657 0.0
single-stranded DNA-dependent ATP-dependent 3'-5' DNA helicase activity Hs molecular function 657 0.0
sequence-specific mRNA binding Hs molecular function 657 0.0
promoter-specific chromatin binding Hs molecular function 657 0.0

GO (InterProScan)

2 results

GO Term Analysis Type e-value
nucleic acid binding Pfam molecular function 4.6E-8
ATP binding Pfam molecular function 4.6E-8

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