- Gene 'Boschl.CG.Botznik201...'
Gene Card
Best human hits
LSM10; LSM2; SNRPD1
Species
Unique Gene ID
Boschl.g00002559
Gene Model ID
Boschl.CG.Botznik2013.chrUn.g02559
Location
chrUn:16711689..16714146
Transcript Models and Sequences
n/a
You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see how you can interact with this tree
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see the tree inference method
InterPro
5 results
| IPR Term | Analysis | Definition |
|---|---|---|
| LSM_dom_euk/arc | SMART | LSM domain, eukaryotic/archaea-type |
| LSm4/Sm_D1/D3 | PANTHER | Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3 |
| LSM_dom_euk/arc | Pfam | LSM domain, eukaryotic/archaea-type |
| LSM_dom_sf | SUPERFAMILY | LSM domain superfamily |
| Sm_D1 | CDD | Small nuclear ribonucleoprotein D1 |
| GO Term | Annotation Origin | Type |
|---|
GO (Orthology)
31 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|---|---|
| commitment complex | Hs | cellular component |
| spliceosomal complex assembly | Hs | biological process |
| spliceosomal snRNP assembly | Hs | biological process |
| mRNA splicing, via spliceosome | Hs | biological process |
| RNA binding | Hs | molecular function |
| protein binding | Hs | molecular function |
| nucleus | Hs | cellular component |
| nucleoplasm | Hs | cellular component |
| spliceosomal complex | Hs | cellular component |
| U5 snRNP | Hs | cellular component |
| U1 snRNP | Hs | cellular component |
| U2 snRNP | Hs | cellular component |
| U4 snRNP | Hs | cellular component |
| U12-type spliceosomal complex | Hs | cellular component |
| cytoplasm | Hs | cellular component |
| cytosol | Hs | cellular component |
| RNA processing | Hs | biological process |
| mRNA processing | Hs | biological process |
| RNA splicing | Hs | biological process |
| intracellular ribonucleoprotein complex | Hs | cellular component |
| small nuclear ribonucleoprotein complex | Hs | cellular component |
| methylosome | Hs | cellular component |
| pICln-Sm protein complex | Hs | cellular component |
| SMN-Sm protein complex | Hs | cellular component |
| nuclear import | Hs | biological process |
| U2-type catalytic step 2 spliceosome | Hs | cellular component |
| prespliceosome | Hs | cellular component |
| precatalytic spliceosome | Hs | cellular component |
| catalytic step 2 spliceosome | Hs | cellular component |
| spliceosomal tri-snRNP complex | Hs | cellular component |
| U1 snRNP binding | Hs | molecular function |
GO (Blast)
35 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| commitment complex | Hs | cellular component | 147 | 4.07e-47 |
| P-body | Hs | cellular component | 39.7 | 4.76e-05 |
| RNA binding | Hs | molecular function | 147 | 4.07e-47 |
| protein binding | Hs | molecular function | 147 | 4.07e-47 |
| nucleus | Hs | cellular component | 147 | 4.07e-47 |
| nucleoplasm | Hs | cellular component | 147 | 4.07e-47 |
| spliceosomal complex | Hs | cellular component | 147 | 4.07e-47 |
| U5 snRNP | Hs | cellular component | 147 | 4.07e-47 |
| U7 snRNP | Hs | cellular component | 43.5 | 2.51e-06 |
| U1 snRNP | Hs | cellular component | 147 | 4.07e-47 |
| U2 snRNP | Hs | cellular component | 147 | 4.07e-47 |
| U4 snRNP | Hs | cellular component | 147 | 4.07e-47 |
| U6 snRNP | Hs | cellular component | 39.7 | 4.76e-05 |
| U12-type spliceosomal complex | Hs | cellular component | 147 | 4.07e-47 |
| cytoplasm | Hs | cellular component | 147 | 4.07e-47 |
| cytosol | Hs | cellular component | 147 | 4.07e-47 |
| Cajal body | Hs | cellular component | 43.5 | 2.51e-06 |
| nuclear body | Hs | cellular component | 43.5 | 2.51e-06 |
| U6 snRNA binding | Hs | molecular function | 39.7 | 4.76e-05 |
| Ral GTPase binding | Hs | molecular function | 39.7 | 4.76e-05 |
| intracellular ribonucleoprotein complex | Hs | cellular component | 147 | 4.07e-47 |
| small nuclear ribonucleoprotein complex | Hs | cellular component | 147 | 4.07e-47 |
| methylosome | Hs | cellular component | 147 | 4.07e-47 |
| pICln-Sm protein complex | Hs | cellular component | 147 | 4.07e-47 |
| SMN-Sm protein complex | Hs | cellular component | 147 | 4.07e-47 |
| U4/U6 x U5 tri-snRNP complex | Hs | cellular component | 39.7 | 4.76e-05 |
| U2-type catalytic step 2 spliceosome | Hs | cellular component | 147 | 4.07e-47 |
| prespliceosome | Hs | cellular component | 147 | 4.07e-47 |
| precatalytic spliceosome | Hs | cellular component | 147 | 4.07e-47 |
| catalytic step 2 spliceosome | Hs | cellular component | 147 | 4.07e-47 |
| histone pre-mRNA DCP binding | Hs | molecular function | 43.5 | 2.51e-06 |
| U7 snRNA binding | Hs | molecular function | 43.5 | 2.51e-06 |
| spliceosomal tri-snRNP complex | Hs | cellular component | 147 | 4.07e-47 |
| U1 snRNP binding | Hs | molecular function | 147 | 4.07e-47 |
| Lsm1-7-Pat1 complex | Hs | cellular component | 39.7 | 4.76e-05 |
GO (InterProScan)
2 results
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| spliceosomal snRNP assembly | CDD | biological process | 1.38401E-55 |
| RNA processing | PANTHER | biological process | 7.2E-42 |
