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GENE CARD

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Gene Card

Best human hits

YBX1; YBX2; YBX3

Species

B.schlosseri

Unique Gene ID

Boschl.g00000227

Gene Model ID

Boschl.CG.Botznik2013.chr9.g00227

Location

chr9:17349725..17356804

Transcript Models and Sequences

  Boschl.CG.Botznik2013.chr9.g00227.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

No result

IPR Term Analysis Definition

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

54 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
negative regulation of transcription from RNA polymerase II promoter Hs biological process
mRNA splicing, via spliceosome Hs biological process
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function
fibrillar center Hs cellular component
nucleic acid binding Hs molecular function
DNA binding Hs molecular function
chromatin binding Hs molecular function
double-stranded DNA binding Hs molecular function
single-stranded DNA binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
transcription corepressor activity Hs molecular function
RNA binding Hs molecular function
mRNA 3'-UTR binding Hs molecular function
protein binding Hs molecular function
extracellular region Hs cellular component
nucleus Hs cellular component
nucleoplasm Hs cellular component
U12-type spliceosomal complex Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
polysome Hs cellular component
bicellular tight junction Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
transcription from RNA polymerase II promoter Hs biological process
mRNA processing Hs biological process
Notch signaling pathway Hs biological process
spermatogenesis Hs biological process
RNA splicing Hs biological process
male gonad development Hs biological process
response to cold Hs biological process
fertilization Hs biological process
cytoplasmic stress granule Hs cellular component
Rho GTPase binding Hs molecular function
intracellular ribonucleoprotein complex Hs cellular component
nuclear membrane Hs cellular component
negative regulation of apoptotic process Hs biological process
intracellular membrane-bounded organelle Hs cellular component
positive regulation of transcription from RNA polymerase II promoter Hs biological process
positive regulation of organ growth Hs biological process
perinuclear region of cytoplasm Hs cellular component
oocyte development Hs biological process
GTPase binding Hs molecular function
positive regulation of cell division Hs biological process
extracellular exosome Hs cellular component
3'-UTR-mediated mRNA stabilization Hs biological process
CRD-mediated mRNA stability complex Hs cellular component
histone pre-mRNA 3'end processing complex Hs cellular component
cellular response to tumor necrosis factor Hs biological process
positive regulation of cytoplasmic translation Hs biological process

GO (Blast)

34 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 81.3 2.62e-18
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 82.0 1.45e-18
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 82.0 1.45e-18
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 82.0 1.45e-18
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 81.3 2.62e-18
fibrillar center Hs cellular component 77.0 1.08e-16
nucleic acid binding Hs molecular function 82.0 1.45e-18
DNA binding Hs molecular function 82.0 1.45e-18
chromatin binding Hs molecular function 82.0 1.45e-18
double-stranded DNA binding Hs molecular function 82.0 1.45e-18
single-stranded DNA binding Hs molecular function 82.0 1.45e-18
transcription factor activity, sequence-specific DNA binding Hs molecular function 82.0 1.45e-18
transcription corepressor activity Hs molecular function 81.3 2.62e-18
RNA binding Hs molecular function 82.0 1.45e-18
mRNA 3'-UTR binding Hs molecular function 81.3 2.62e-18
protein binding Hs molecular function 82.0 1.45e-18
extracellular region Hs cellular component 82.0 1.45e-18
nucleus Hs cellular component 82.0 1.45e-18
nucleoplasm Hs cellular component 82.0 1.45e-18
U12-type spliceosomal complex Hs cellular component 82.0 1.45e-18
cytoplasm Hs cellular component 82.0 1.45e-18
cytosol Hs cellular component 82.0 1.45e-18
polysome Hs cellular component 81.3 2.62e-18
bicellular tight junction Hs cellular component 81.3 2.62e-18
cytoplasmic stress granule Hs cellular component 82.0 1.45e-18
Rho GTPase binding Hs molecular function 81.3 2.62e-18
intracellular ribonucleoprotein complex Hs cellular component 82.0 1.45e-18
nuclear membrane Hs cellular component 82.0 1.45e-18
intracellular membrane-bounded organelle Hs cellular component 82.0 1.45e-18
perinuclear region of cytoplasm Hs cellular component 81.3 2.62e-18
GTPase binding Hs molecular function 82.0 1.45e-18
extracellular exosome Hs cellular component 82.0 1.45e-18
CRD-mediated mRNA stability complex Hs cellular component 82.0 1.45e-18
histone pre-mRNA 3'end processing complex Hs cellular component 82.0 1.45e-18

GO (InterProScan)

No result

GO Term Analysis Type e-value