Aniseed - Gene card

Gene 'Boleac.CG.SB_v3.S78....'

Gene Card

Best human hits

ELAVL4; MSI2; NCL

Species

B.leachii

Unique Gene ID

Boleac.g00014077

Gene Model ID

Boleac.CG.SB_v3.S78.g14077

Location

S78:97517..110770

Transcript Models and Sequences

Boleac.CG.SB_v3.S78.g14077.01.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
RRM_dom	ProSiteProfiles	RNA recognition motif domain
Nucleotide-bd_a/b_plait_sf	Gene3D	Nucleotide-binding alpha-beta plait domain superfamily
RBD_domain_sf	SUPERFAMILY	RNA-binding domain superfamily
RRM_dom	SMART	RNA recognition motif domain
RRM_dom	Pfam	RNA recognition motif domain

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

23 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
angiogenesis	Hs	biological process
nucleic acid binding	Hs	molecular function
DNA binding	Hs	molecular function
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
cell cortex	Hs	cellular component
protein C-terminus binding	Hs	molecular function
membrane	Hs	cellular component
negative regulation of translation	Hs	biological process
intracellular ribonucleoprotein complex	Hs	cellular component
cytoplasmic ribonucleoprotein granule	Hs	cellular component
telomeric DNA binding	Hs	molecular function
identical protein binding	Hs	molecular function
DNA topoisomerase binding	Hs	molecular function
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
mRNA 5'-UTR binding	Hs	molecular function
extracellular exosome	Hs	cellular component
cellular response to epidermal growth factor stimulus	Hs	biological process
positive regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter	Hs	biological process

GO (Blast)

24 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleic acid binding	Hs	molecular function	117	1.26e-26
DNA binding	Hs	molecular function	117	1.26e-26
RNA binding	Hs	molecular function	117	1.26e-26
single-stranded RNA binding	Hs	molecular function	67.4	8.71e-12
mRNA binding	Hs	molecular function	70.9	1.25e-12
mRNA 3'-UTR binding	Hs	molecular function	70.9	1.25e-12
protein binding	Hs	molecular function	117	1.26e-26
nucleus	Hs	cellular component	117	1.26e-26
nucleoplasm	Hs	cellular component	117	1.26e-26
nucleolus	Hs	cellular component	117	1.26e-26
cytoplasm	Hs	cellular component	117	1.26e-26
polysome	Hs	cellular component	67.4	8.71e-12
cell cortex	Hs	cellular component	117	1.26e-26
protein C-terminus binding	Hs	molecular function	117	1.26e-26
poly(U) RNA binding	Hs	molecular function	67.4	8.71e-12
membrane	Hs	cellular component	117	1.26e-26
AU-rich element binding	Hs	molecular function	70.9	1.25e-12
intracellular ribonucleoprotein complex	Hs	cellular component	117	1.26e-26
cytoplasmic ribonucleoprotein granule	Hs	cellular component	117	1.26e-26
telomeric DNA binding	Hs	molecular function	117	1.26e-26
identical protein binding	Hs	molecular function	117	1.26e-26
DNA topoisomerase binding	Hs	molecular function	117	1.26e-26
mRNA 5'-UTR binding	Hs	molecular function	117	1.26e-26
extracellular exosome	Hs	cellular component	117	1.26e-26

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
nucleic acid binding	SUPERFAMILY	molecular function	2.79E-30