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Gene Card

Best human hits

HOXA1; HOXB1; HOXD1

Species

B.leachii

Unique Gene ID

Boleac.g00012513

Gene Model ID

Boleac.CG.SB_v3.S624.g12513

Location

S624:23943..35256

Transcript Models and Sequences

  Boleac.CG.SB_v3.S624.g12513.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
Homeobox_dom SMART Homeobox domain
Homeobox_CS ProSitePatterns Homeobox, conserved site
Homeobox_dom CDD Homeobox domain
Homeobox_metazoa PRINTS Homeobox domain, metazoa
Homeobox-like_sf SUPERFAMILY Homeobox-like domain superfamily
Homeobox_dom ProSiteProfiles Homeobox domain
Homeobox_dom Pfam Homeobox domain

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

23 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function
DNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
transcription from RNA polymerase II promoter Hs biological process
multicellular organism development Hs biological process
sensory perception of sound Hs biological process
optokinetic behavior Hs biological process
anatomical structure morphogenesis Hs biological process
identical protein binding Hs molecular function
sequence-specific DNA binding Hs molecular function
positive regulation of transcription from RNA polymerase II promoter Hs biological process
embryonic neurocranium morphogenesis Hs biological process
inner ear development Hs biological process
artery morphogenesis Hs biological process
regulation of behavior Hs biological process
cognition Hs biological process
neuromuscular process Hs biological process
artery development Hs biological process
semicircular canal formation Hs biological process

GO (Blast)

12 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 146 6.34e-40
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 146 6.34e-40
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 171 3.95e-49
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 146 6.34e-40
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 171 3.95e-49
DNA binding Hs molecular function 171 3.95e-49
protein binding Hs molecular function 171 3.95e-49
nucleus Hs cellular component 171 3.95e-49
nucleoplasm Hs cellular component 133 4.71e-35
protein domain specific binding Hs molecular function 146 6.34e-40
identical protein binding Hs molecular function 171 3.95e-49
sequence-specific DNA binding Hs molecular function 171 3.95e-49

GO (InterProScan)

3 results

GO Term Analysis Type e-value
DNA binding SMART molecular function 2.3E-23
regulation of transcription, DNA-templated ProSitePatterns biological process
sequence-specific DNA binding ProSitePatterns molecular function

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