Gene Card
Best human hits
PABPC1; PABPC3; SART3
Species
Unique Gene ID
Boleac.g00009573
Gene Model ID
Boleac.CG.SB_v3.S426.g09573
Location
S426:85336..93521
Transcript Models and Sequences
n/a
You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see how you can interact with this tree
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see the tree inference method
InterPro
9 results
| IPR Term | Analysis | Definition |
|---|---|---|
| RRM_dom | Pfam | RNA recognition motif domain |
| RRM_dom | ProSiteProfiles | RNA recognition motif domain |
| HAT | SMART | HAT (Half-A-TPR) repeat |
| Nucleotide-bd_a/b_plait_sf | Gene3D | Nucleotide-binding alpha-beta plait domain superfamily |
| TPR-like_helical_dom_sf | SUPERFAMILY | Tetratricopeptide-like helical domain superfamily |
| RBD_domain_sf | SUPERFAMILY | RNA-binding domain superfamily |
| TPR-like_helical_dom_sf | Gene3D | Tetratricopeptide-like helical domain superfamily |
| SART3_RRM1 | CDD | SART3, RNA recognition motif 1 |
| RRM_dom | SMART | RNA recognition motif domain |
| GO Term | Annotation Origin | Type |
|---|
GO (Orthology)
26 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|---|---|
| spliceosomal tri-snRNP complex assembly | Hs | biological process |
| spliceosomal snRNP assembly | Hs | biological process |
| mRNA splicing, via spliceosome | Hs | biological process |
| cell morphogenesis | Hs | biological process |
| nucleic acid binding | Hs | molecular function |
| RNA binding | Hs | molecular function |
| protein binding | Hs | molecular function |
| nucleus | Hs | cellular component |
| nucleoplasm | Hs | cellular component |
| U6atac snRNP | Hs | cellular component |
| cytoplasm | Hs | cellular component |
| nucleosome assembly | Hs | biological process |
| RNA processing | Hs | biological process |
| mRNA processing | Hs | biological process |
| RNA splicing | Hs | biological process |
| regulation of gene expression | Hs | biological process |
| Cajal body | Hs | cellular component |
| nuclear speck | Hs | cellular component |
| U6 snRNA binding | Hs | molecular function |
| U4 snRNA binding | Hs | molecular function |
| U6atac snRNA binding | Hs | molecular function |
| histone binding | Hs | molecular function |
| U4/U6 snRNP | Hs | cellular component |
| hematopoietic stem cell proliferation | Hs | biological process |
| positive regulation of histone deubiquitination | Hs | biological process |
| ubiquitin-specific protease binding | Hs | molecular function |
GO (Blast)
29 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| nucleic acid binding | Hs | molecular function | 562 | 0.0 |
| RNA binding | Hs | molecular function | 562 | 0.0 |
| mRNA 3'-UTR binding | Hs | molecular function | 82.4 | 4.67e-16 |
| protein binding | Hs | molecular function | 562 | 0.0 |
| nucleus | Hs | cellular component | 562 | 0.0 |
| nucleoplasm | Hs | cellular component | 562 | 0.0 |
| spliceosomal complex | Hs | cellular component | 82.4 | 4.67e-16 |
| U6atac snRNP | Hs | cellular component | 562 | 0.0 |
| cytoplasm | Hs | cellular component | 562 | 0.0 |
| cytosol | Hs | cellular component | 82.4 | 4.67e-16 |
| focal adhesion | Hs | cellular component | 82.4 | 4.67e-16 |
| protein C-terminus binding | Hs | molecular function | 82.4 | 4.67e-16 |
| poly(A) binding | Hs | molecular function | 82.4 | 4.67e-16 |
| poly(U) RNA binding | Hs | molecular function | 82.4 | 4.67e-16 |
| translation activator activity | Hs | molecular function | 82.4 | 4.67e-16 |
| cytoplasmic stress granule | Hs | cellular component | 82.4 | 4.67e-16 |
| Cajal body | Hs | cellular component | 562 | 0.0 |
| membrane | Hs | cellular component | 82.4 | 4.67e-16 |
| nuclear speck | Hs | cellular component | 562 | 0.0 |
| U6 snRNA binding | Hs | molecular function | 562 | 0.0 |
| intracellular ribonucleoprotein complex | Hs | cellular component | 82.4 | 4.67e-16 |
| U4 snRNA binding | Hs | molecular function | 562 | 0.0 |
| U6atac snRNA binding | Hs | molecular function | 562 | 0.0 |
| cytoplasmic ribonucleoprotein granule | Hs | cellular component | 82.4 | 4.67e-16 |
| histone binding | Hs | molecular function | 562 | 0.0 |
| extracellular exosome | Hs | cellular component | 82.4 | 4.67e-16 |
| U4/U6 snRNP | Hs | cellular component | 562 | 0.0 |
| catalytic step 2 spliceosome | Hs | cellular component | 82.4 | 4.67e-16 |
| ubiquitin-specific protease binding | Hs | molecular function | 562 | 0.0 |
GO (InterProScan)
3 results
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| nucleic acid binding | SUPERFAMILY | molecular function | 5.1E-27 |
| protein binding | Gene3D | molecular function | 2.7E-44 |
| RNA processing | SMART | biological process | 0.079 |
