Aniseed - Gene card

Gene Card

Best human hits

SOX13; SOX5; SOX6

Species

B.leachii

Unique Gene ID

Boleac.g00006545

Gene Model ID

Boleac.CG.SB_v3.S278.g06545

Location

S278:8719..14035

Transcript Models and Sequences

Boleac.CG.SB_v3.S278.g06545.01.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
HMG_box_dom_sf	Gene3D	High mobility group box domain superfamily
HMG_box_dom	SMART	High mobility group box domain
HMG_box_dom	Pfam	High mobility group box domain
SOX-6	PANTHER	Transcription factor SOX-6
HMG_box_dom_sf	SUPERFAMILY	High mobility group box domain superfamily
HMG_box_dom	ProSiteProfiles	High mobility group box domain

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

68 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
DNA binding	Hs	molecular function
transcription factor activity, sequence-specific DNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
regulation of transcription from RNA polymerase II promoter	Hs	biological process
transcription from RNA polymerase II promoter	Hs	biological process
multicellular organism development	Hs	biological process
regulation of gene expression	Hs	biological process
sequence-specific DNA binding	Hs	molecular function
transcription regulatory region DNA binding	Hs	molecular function
positive regulation of transcription, DNA-templated	Hs	biological process
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
protein heterodimerization activity	Hs	molecular function
transcription regulatory region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II core promoter sequence-specific DNA binding	Hs	molecular function
core promoter sequence-specific DNA binding	Hs	molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function
RNA polymerase II transcription corepressor activity	Hs	molecular function
osteoblast differentiation	Hs	biological process
eye development	Hs	biological process
endodermal cell fate specification	Hs	biological process
neuron migration	Hs	biological process
lens morphogenesis in camera-type eye	Hs	biological process
chromatin binding	Hs	molecular function
transcription factor complex	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
chromatin organization	Hs	biological process
cell cycle arrest	Hs	biological process
nervous system development	Hs	biological process
central nervous system development	Hs	biological process
sensory organ development	Hs	biological process
sex determination	Hs	biological process
male gonad development	Hs	biological process
response to wounding	Hs	biological process
cytokine-mediated signaling pathway	Hs	biological process
ventral spinal cord interneuron specification	Hs	biological process
hypothalamus development	Hs	biological process
forebrain neuron differentiation	Hs	biological process
forebrain neuron development	Hs	biological process
pituitary gland development	Hs	biological process
adenohypophysis development	Hs	biological process
positive regulation of cell-cell adhesion	Hs	biological process
cell differentiation	Hs	biological process
forebrain development	Hs	biological process
somatic stem cell population maintenance	Hs	biological process
miRNA binding	Hs	molecular function
tissue regeneration	Hs	biological process
regulation of cysteine-type endopeptidase activity involved in apoptotic process	Hs	biological process
positive regulation of MAPK cascade	Hs	biological process
nuclear transcription factor complex	Hs	cellular component
positive regulation of cell differentiation	Hs	biological process
negative regulation of neuron differentiation	Hs	biological process
negative regulation of striated muscle tissue development	Hs	biological process
myoblast development	Hs	biological process
inner ear development	Hs	biological process
negative regulation of epithelial cell proliferation	Hs	biological process
face development	Hs	biological process
response to growth factor	Hs	biological process
negative regulation of canonical Wnt signaling pathway	Hs	biological process
neuronal stem cell population maintenance	Hs	biological process
negative regulation of nucleic acid-templated transcription	Hs	biological process

GO (Blast)

12 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function	202	4.67e-60
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	211	2.70e-62
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	212	8.49e-63
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	211	2.70e-62
DNA binding	Hs	molecular function	212	8.49e-63
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	212	8.49e-63
protein binding	Hs	molecular function	212	8.49e-63
nucleus	Hs	cellular component	212	8.49e-63
nucleoplasm	Hs	cellular component	211	2.70e-62
sequence-specific DNA binding	Hs	molecular function	211	2.70e-62
transcription regulatory region DNA binding	Hs	molecular function	211	2.70e-62
protein heterodimerization activity	Hs	molecular function	211	2.70e-62

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
DNA binding	PANTHER	molecular function	1.4E-78
regulation of transcription, DNA-templated	PANTHER	biological process	1.4E-78
multicellular organism development	PANTHER	biological process	1.4E-78