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Gene Card

Best human hits

DDX1; DDX17; DDX5

Species

B.leachii

Unique Gene ID

Boleac.g00006206

Gene Model ID

Boleac.CG.SB_v3.S26.g06206

Location

S26:508243..514040

Transcript Models and Sequences

  Boleac.CG.SB_v3.S26.g06206.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

13 results

IPR Term Analysis Definition
Helicase_C Pfam Helicase, C-terminal
DEAD/DEAH_box_helicase_dom Pfam DEAD/DEAH box helicase domain
Helicase_ATP-bd SMART Helicase superfamily 1/2, ATP-binding domain
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
Helicase_C CDD Helicase, C-terminal
SPRY_dom SMART SPRY domain
RNA_helicase_DEAD_Q_motif ProSiteProfiles RNA helicase, DEAD-box type, Q motif
Helicase_C SMART Helicase, C-terminal
SPRY_dom Pfam SPRY domain
ConA-like_dom_sf SUPERFAMILY Concanavalin A-like lectin/glucanase domain superfamily
Helicase_ATP-bd ProSiteProfiles Helicase superfamily 1/2, ATP-binding domain
Helicase_C ProSiteProfiles Helicase, C-terminal
B30.2/SPRY ProSiteProfiles B30.2/SPRY domain

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

42 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nucleotide binding Hs molecular function
spliceosomal complex assembly Hs biological process
nucleic acid binding Hs molecular function
DNA binding Hs molecular function
chromatin binding Hs molecular function
transcription cofactor activity Hs molecular function
RNA binding Hs molecular function
RNA helicase activity Hs molecular function
double-stranded RNA binding Hs molecular function
ATP-dependent RNA helicase activity Hs molecular function
helicase activity Hs molecular function
nuclease activity Hs molecular function
exonuclease activity Hs molecular function
protein binding Hs molecular function
ATP binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
nucleolus Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
double-strand break repair Hs biological process
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
tRNA splicing, via endonucleolytic cleavage and ligation Hs biological process
mRNA processing Hs biological process
regulation of translational initiation Hs biological process
multicellular organism development Hs biological process
ATP-dependent helicase activity Hs molecular function
tRNA processing Hs biological process
poly(A) binding Hs molecular function
response to virus Hs biological process
cytoplasmic stress granule Hs cellular component
RNA secondary structure unwinding Hs biological process
membrane Hs cellular component
hydrolase activity Hs molecular function
intracellular ribonucleoprotein complex Hs cellular component
DNA duplex unwinding Hs biological process
DNA/RNA helicase activity Hs molecular function
response to exogenous dsRNA Hs biological process
cleavage body Hs cellular component
tRNA-splicing ligase complex Hs cellular component
nucleic acid phosphodiester bond hydrolysis Hs biological process

GO (Blast)

47 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleotide binding Hs molecular function 970 0.0
nucleic acid binding Hs molecular function 970 0.0
DNA binding Hs molecular function 970 0.0
chromatin binding Hs molecular function 970 0.0
transcription cofactor activity Hs molecular function 970 0.0
transcription coactivator activity Hs molecular function 148 5.52e-37
RNA binding Hs molecular function 970 0.0
RNA helicase activity Hs molecular function 970 0.0
double-stranded RNA binding Hs molecular function 970 0.0
mRNA 3'-UTR binding Hs molecular function 147 3.64e-37
ATP-dependent RNA helicase activity Hs molecular function 970 0.0
helicase activity Hs molecular function 970 0.0
nuclease activity Hs molecular function 970 0.0
exonuclease activity Hs molecular function 970 0.0
protein binding Hs molecular function 970 0.0
calmodulin binding Hs molecular function 147 3.64e-37
ATP binding Hs molecular function 970 0.0
nucleus Hs cellular component 970 0.0
nucleoplasm Hs cellular component 970 0.0
spliceosomal complex Hs cellular component 147 3.64e-37
nucleolus Hs cellular component 970 0.0
cytoplasm Hs cellular component 970 0.0
cytosol Hs cellular component 970 0.0
ATP-dependent helicase activity Hs molecular function 970 0.0
poly(A) binding Hs molecular function 970 0.0
RNA-dependent ATPase activity Hs molecular function 148 5.52e-37
cytoplasmic stress granule Hs cellular component 970 0.0
membrane Hs cellular component 970 0.0
nuclear speck Hs cellular component 148 5.52e-37
hydrolase activity Hs molecular function 970 0.0
enzyme binding Hs molecular function 147 3.64e-37
intracellular ribonucleoprotein complex Hs cellular component 970 0.0
DNA/RNA helicase activity Hs molecular function 970 0.0
MH2 domain binding Hs molecular function 147 3.64e-37
pre-mRNA binding Hs molecular function 147 3.64e-37
ribonucleoprotein complex binding Hs molecular function 147 3.64e-37
SMAD binding Hs molecular function 147 3.64e-37
calcium-dependent protein binding Hs molecular function 147 3.64e-37
androgen receptor binding Hs molecular function 147 3.64e-37
extracellular exosome Hs cellular component 147 3.64e-37
R-SMAD binding Hs molecular function 147 3.64e-37
primary miRNA binding Hs molecular function 147 3.64e-37
catalytic step 2 spliceosome Hs cellular component 147 3.64e-37
SMAD protein complex Hs cellular component 147 3.64e-37
cleavage body Hs cellular component 970 0.0
tRNA-splicing ligase complex Hs cellular component 970 0.0
promoter-specific chromatin binding Hs molecular function 147 3.64e-37

GO (InterProScan)

3 results

GO Term Analysis Type e-value
nucleic acid binding Pfam molecular function 8.5E-65
protein binding SMART molecular function 5.2E-28
ATP binding Pfam molecular function 8.5E-65

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