- Gene 'Boleac.CG.SB_v3.S159...'
Gene Card
Best human hits
EXOSC4; EXOSC6; SOD2
Species
Unique Gene ID
Boleac.g00003295
Gene Model ID
Boleac.CG.SB_v3.S159.g03295
Location
S159:21644..33377
Transcript Models and Sequences
n/a
You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see how you can interact with this tree
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see the tree inference method
InterPro
7 results
| IPR Term | Analysis | Definition |
|---|---|---|
| Ribosomal_S5_D2-typ_fold | SUPERFAMILY | Ribosomal protein S5 domain 2-type fold |
| ExoRNase_PH_dom1 | Pfam | Exoribonuclease, phosphorolytic domain 1 |
| SOD_C_sf | Gene3D | Manganese/iron superoxide dismutase, C-terminal domain superfamily |
| PNPase/RNase_PH_dom_sf | Gene3D | PNPase/RNase PH domain superfamily |
| SOD_C_sf | SUPERFAMILY | Manganese/iron superoxide dismutase, C-terminal domain superfamily |
| ExoRNase_PH_dom2_sf | SUPERFAMILY | Exoribonuclease, PH domain 2 superfamily |
| Mn/Fe_SOD_C | Pfam | Manganese/iron superoxide dismutase, C-terminal |
| GO Term | Annotation Origin | Type |
|---|
GO (Orthology)
19 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|---|---|
| nuclear exosome (RNase complex) | Hs | cellular component |
| cytoplasmic exosome (RNase complex) | Hs | cellular component |
| exosome (RNase complex) | Hs | cellular component |
| RNA binding | Hs | molecular function |
| nucleus | Hs | cellular component |
| nucleoplasm | Hs | cellular component |
| nucleolus | Hs | cellular component |
| cytoplasm | Hs | cellular component |
| cytosol | Hs | cellular component |
| rRNA processing | Hs | biological process |
| rRNA catabolic process | Hs | biological process |
| rRNA 3'-end processing | Hs | biological process |
| nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' | Hs | biological process |
| U4 snRNA 3'-end processing | Hs | biological process |
| regulation of mRNA stability | Hs | biological process |
| exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay | Hs | biological process |
| isotype switching | Hs | biological process |
| nuclear mRNA surveillance | Hs | biological process |
| polyadenylation-dependent snoRNA 3'-end processing | Hs | biological process |
GO (Blast)
17 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| 3'-5'-exoribonuclease activity | Hs | molecular function | 73.9 | 8.96e-15 |
| nuclear exosome (RNase complex) | Hs | cellular component | 124 | 1.06e-32 |
| cytoplasmic exosome (RNase complex) | Hs | cellular component | 124 | 1.06e-32 |
| exosome (RNase complex) | Hs | cellular component | 124 | 1.06e-32 |
| RNA binding | Hs | molecular function | 124 | 1.06e-32 |
| superoxide dismutase activity | Hs | molecular function | 113 | 3.71e-29 |
| protein binding | Hs | molecular function | 73.9 | 8.96e-15 |
| nucleus | Hs | cellular component | 124 | 1.06e-32 |
| nucleoplasm | Hs | cellular component | 124 | 1.06e-32 |
| nucleolus | Hs | cellular component | 124 | 1.06e-32 |
| cytoplasm | Hs | cellular component | 124 | 1.06e-32 |
| cytosol | Hs | cellular component | 124 | 1.06e-32 |
| oxidoreductase activity | Hs | molecular function | 113 | 3.71e-29 |
| AU-rich element binding | Hs | molecular function | 73.9 | 8.96e-15 |
| transcriptionally active chromatin | Hs | cellular component | 73.9 | 8.96e-15 |
| intermediate filament cytoskeleton | Hs | cellular component | 73.9 | 8.96e-15 |
| metal ion binding | Hs | molecular function | 113 | 3.71e-29 |
GO (InterProScan)
4 results
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| superoxide dismutase activity | Pfam | molecular function | 1.2E-16 |
| superoxide metabolic process | Pfam | biological process | 1.2E-16 |
| metal ion binding | Pfam | molecular function | 1.2E-16 |
| oxidation-reduction process | Pfam | biological process | 1.2E-16 |
