Aniseed - Gene card

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

3 results

AHC0AAA184YH24

Plate: Plate_184_H24

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
MASH1/Ascl1a-like	PANTHER	Achaete-scute transcription factor-related
bHLH_dom	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain
HLH_DNA-bd_sf	SUPERFAMILY	Helix-loop-helix DNA-binding domain superfamily
HLH_DNA-bd_sf	Gene3D	Helix-loop-helix DNA-binding domain superfamily
bHLH_dom	CDD	Myc-type, basic helix-loop-helix (bHLH) domain
bHLH_dom	SMART	Myc-type, basic helix-loop-helix (bHLH) domain
bHLH_dom	Pfam	Myc-type, basic helix-loop-helix (bHLH) domain

GOSlim

27 results

GO Term	Annotation Origin	Type
RNA polymerase II regulatory region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Orthology	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
transcription factor activity, transcription factor binding	Blast	molecular function
DNA binding	Orthology	molecular function
chromatin binding	Blast	molecular function
double-stranded DNA binding	Blast	molecular function
transcription factor activity, sequence-specific DNA binding	Blast	molecular function
protein binding	Blast	molecular function
nucleus	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
regulation of transcription from RNA polymerase II promoter	InterProScan	biological process
multicellular organism development	Orthology	biological process
cell differentiation	Orthology	biological process
protein homodimerization activity	Blast	molecular function
neuronal cell body	Blast	cellular component
sequence-specific DNA binding	Orthology	molecular function
positive regulation of transcription from RNA polymerase II promoter	Orthology	biological process
protein dimerization activity	Orthology	molecular function
transcription from RNA polymerase II promoter	Orthology	biological process
transcription factor binding	Orthology	molecular function
intracellular part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
cell development	Orthology	biological process
gamete generation	Orthology	biological process
nuclear part	Blast	cellular component

GO (Orthology)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
DNA binding	Hs	molecular function
nucleus	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
multicellular organism development	Hs	biological process
cell differentiation	Hs	biological process
sequence-specific DNA binding	Hs	molecular function
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
protein dimerization activity	Hs	molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function
transcription factor complex	Hs	cellular component
transcription from RNA polymerase II promoter	Hs	biological process
transcription factor binding	Hs	molecular function
oogenesis	Hs	biological process
oocyte development	Hs	biological process

GO (Blast)

18 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function	65.1	3.60e-12
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	61.6	9.47e-11
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	62.0	2.66e-11
transcription factor activity, transcription factor binding	Hs	molecular function	61.6	9.47e-11
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	61.6	9.47e-11
DNA binding	Hs	molecular function	65.1	3.60e-12
chromatin binding	Hs	molecular function	61.6	9.47e-11
double-stranded DNA binding	Hs	molecular function	61.6	9.47e-11
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	65.1	3.60e-12
protein binding	Hs	molecular function	62.0	2.66e-11
nucleus	Hs	cellular component	65.1	3.60e-12
protein homodimerization activity	Hs	molecular function	61.6	9.47e-11
neuronal cell body	Hs	cellular component	61.6	9.47e-11
bHLH transcription factor binding	Hs	molecular function	61.6	9.47e-11
sequence-specific DNA binding	Hs	molecular function	61.6	9.47e-11
protein dimerization activity	Hs	molecular function	65.1	3.60e-12
E-box binding	Hs	molecular function	61.6	9.47e-11
RNA polymerase II transcription factor complex	Hs	cellular component	65.1	3.60e-12

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
DNA binding	PANTHER	molecular function	8.7E-25
regulation of transcription from RNA polymerase II promoter	PANTHER	biological process	8.7E-25
protein dimerization activity	Gene3D	molecular function	1.2E-20

Gene Card

Best human hits

Species

Unique Gene ID

Gene Model ID

Location

Transcript Models and Sequences