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GENE CARD

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Gene Card

Best human hits

YBX1; YBX2; YBX3

Species

M.occidentalis

Unique Gene ID

Moocci.g00020781

Gene Model ID

Moocci.CG.ELv1_2.S542113.g20781

Location

S542113:5588..7668

Transcript Models and Sequences

  Moocci.CG.ELv1_2.S542113.g20781.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
CSD SMART Cold shock domain
NA-bd_OB-fold SUPERFAMILY Nucleic acid-binding, OB-fold
CSP_DNA-bd Pfam Cold-shock protein, DNA-binding
Cold-shock_CS ProSitePatterns Cold-shock conserved site
CSP_DNA-bd CDD Cold-shock protein, DNA-binding
CSP_DNA-bd PRINTS Cold-shock protein, DNA-binding

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

54 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
negative regulation of transcription from RNA polymerase II promoter Hs biological process
mRNA splicing, via spliceosome Hs biological process
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function
fibrillar center Hs cellular component
nucleic acid binding Hs molecular function
DNA binding Hs molecular function
chromatin binding Hs molecular function
double-stranded DNA binding Hs molecular function
single-stranded DNA binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
transcription corepressor activity Hs molecular function
RNA binding Hs molecular function
mRNA 3'-UTR binding Hs molecular function
protein binding Hs molecular function
extracellular region Hs cellular component
nucleus Hs cellular component
nucleoplasm Hs cellular component
U12-type spliceosomal complex Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
polysome Hs cellular component
bicellular tight junction Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
transcription from RNA polymerase II promoter Hs biological process
mRNA processing Hs biological process
Notch signaling pathway Hs biological process
spermatogenesis Hs biological process
RNA splicing Hs biological process
male gonad development Hs biological process
response to cold Hs biological process
fertilization Hs biological process
cytoplasmic stress granule Hs cellular component
Rho GTPase binding Hs molecular function
intracellular ribonucleoprotein complex Hs cellular component
nuclear membrane Hs cellular component
negative regulation of apoptotic process Hs biological process
intracellular membrane-bounded organelle Hs cellular component
positive regulation of transcription from RNA polymerase II promoter Hs biological process
positive regulation of organ growth Hs biological process
perinuclear region of cytoplasm Hs cellular component
oocyte development Hs biological process
GTPase binding Hs molecular function
positive regulation of cell division Hs biological process
extracellular exosome Hs cellular component
3'-UTR-mediated mRNA stabilization Hs biological process
CRD-mediated mRNA stability complex Hs cellular component
histone pre-mRNA 3'end processing complex Hs cellular component
cellular response to tumor necrosis factor Hs biological process
positive regulation of cytoplasmic translation Hs biological process

GO (Blast)

34 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 126 5.02e-36
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 79.0 2.47e-18
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 126 5.02e-36
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 79.0 2.47e-18
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 126 5.02e-36
fibrillar center Hs cellular component 123 5.75e-35
nucleic acid binding Hs molecular function 126 5.02e-36
DNA binding Hs molecular function 126 5.02e-36
chromatin binding Hs molecular function 79.0 2.47e-18
double-stranded DNA binding Hs molecular function 126 5.02e-36
single-stranded DNA binding Hs molecular function 126 5.02e-36
transcription factor activity, sequence-specific DNA binding Hs molecular function 126 5.02e-36
transcription corepressor activity Hs molecular function 126 5.02e-36
RNA binding Hs molecular function 126 5.02e-36
mRNA 3'-UTR binding Hs molecular function 126 5.02e-36
protein binding Hs molecular function 126 5.02e-36
extracellular region Hs cellular component 79.0 2.47e-18
nucleus Hs cellular component 126 5.02e-36
nucleoplasm Hs cellular component 79.0 2.47e-18
U12-type spliceosomal complex Hs cellular component 79.0 2.47e-18
cytoplasm Hs cellular component 126 5.02e-36
cytosol Hs cellular component 126 5.02e-36
polysome Hs cellular component 126 5.02e-36
bicellular tight junction Hs cellular component 126 5.02e-36
cytoplasmic stress granule Hs cellular component 79.0 2.47e-18
Rho GTPase binding Hs molecular function 126 5.02e-36
intracellular ribonucleoprotein complex Hs cellular component 126 5.02e-36
nuclear membrane Hs cellular component 79.0 2.47e-18
intracellular membrane-bounded organelle Hs cellular component 79.0 2.47e-18
perinuclear region of cytoplasm Hs cellular component 126 5.02e-36
GTPase binding Hs molecular function 79.0 2.47e-18
extracellular exosome Hs cellular component 79.0 2.47e-18
CRD-mediated mRNA stability complex Hs cellular component 79.0 2.47e-18
histone pre-mRNA 3'end processing complex Hs cellular component 79.0 2.47e-18

GO (InterProScan)

3 results

GO Term Analysis Type e-value
nucleic acid binding SMART molecular function 2.8E-15
DNA binding Pfam molecular function 1.5E-20
regulation of transcription, DNA-templated Pfam biological process 1.5E-20

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