Aniseed - Gene card

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000005242
NCBI Reference Sequence	NM_001078181.1

Collections

Gateway full ORF

1 result

Gene collection 1 (N. Satoh)

1 result

citb032n03

Plate: R1CiGC31j20

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

1 results

Ci-Achaete-Scute a-like2 -995/-57 REG00000351 [ regulatory_region (extended_promoter) ]

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
MASH1/Ascl1a-like	PANTHER	Achaete-scute transcription factor-related
HLH_DNA-bd_sf	SUPERFAMILY	Helix-loop-helix DNA-binding domain superfamily
bHLH_dom	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain
HLH_DNA-bd_sf	Gene3D	Helix-loop-helix DNA-binding domain superfamily
bHLH_dom	CDD	Myc-type, basic helix-loop-helix (bHLH) domain
bHLH_dom	SMART	Myc-type, basic helix-loop-helix (bHLH) domain
bHLH_dom	Pfam	Myc-type, basic helix-loop-helix (bHLH) domain

GOSlim

28 results

GO Term	Annotation Origin	Type
negative regulation of transcription from RNA polymerase II promoter	Blast	biological process
RNA polymerase II regulatory region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Orthology	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
transcription factor activity, transcription factor binding	Blast	molecular function
DNA binding	Orthology	molecular function
chromatin binding	Blast	molecular function
double-stranded DNA binding	Blast	molecular function
transcription factor activity, sequence-specific DNA binding	Blast	molecular function
protein binding	Blast	molecular function
nucleus	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
regulation of transcription from RNA polymerase II promoter	InterProScan	biological process
multicellular organism development	Orthology	biological process
cell differentiation	Orthology	biological process
protein homodimerization activity	Blast	molecular function
neuronal cell body	Blast	cellular component
sequence-specific DNA binding	Orthology	molecular function
positive regulation of transcription from RNA polymerase II promoter	Orthology	biological process
protein dimerization activity	Orthology	molecular function
transcription from RNA polymerase II promoter	Orthology	biological process
transcription factor binding	Orthology	molecular function
intracellular part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
cell development	Orthology	biological process
gamete generation	Orthology	biological process
nuclear part	Blast	cellular component

GO (Orthology)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
DNA binding	Hs	molecular function
nucleus	Hs	cellular component
transcription factor complex	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
multicellular organism development	Hs	biological process
cell differentiation	Hs	biological process
sequence-specific DNA binding	Hs	molecular function
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
protein dimerization activity	Hs	molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function
transcription from RNA polymerase II promoter	Hs	biological process
transcription factor binding	Hs	molecular function
oogenesis	Hs	biological process
oocyte development	Hs	biological process

GO (Blast)

20 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function	66.6	3.69e-13
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	62.8	1.90e-11
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	66.6	3.69e-13
transcription factor activity, transcription factor binding	Hs	molecular function	62.8	1.90e-11
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	62.8	1.90e-11
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function	66.6	3.69e-13
DNA binding	Hs	molecular function	66.6	3.69e-13
chromatin binding	Hs	molecular function	62.8	1.90e-11
double-stranded DNA binding	Hs	molecular function	62.8	1.90e-11
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	66.6	3.69e-13
protein binding	Hs	molecular function	62.8	1.90e-11
nucleus	Hs	cellular component	66.6	3.69e-13
transcription factor complex	Hs	cellular component	66.6	3.69e-13
protein homodimerization activity	Hs	molecular function	62.8	1.90e-11
neuronal cell body	Hs	cellular component	62.8	1.90e-11
bHLH transcription factor binding	Hs	molecular function	62.8	1.90e-11
sequence-specific DNA binding	Hs	molecular function	62.8	1.90e-11
protein dimerization activity	Hs	molecular function	66.6	3.69e-13
E-box binding	Hs	molecular function	62.8	1.90e-11
RNA polymerase II transcription factor complex	Hs	cellular component	66.6	3.69e-13

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
DNA binding	PANTHER	molecular function	1.2E-28
regulation of transcription from RNA polymerase II promoter	PANTHER	biological process	1.2E-28
protein dimerization activity	Gene3D	molecular function	5.8E-21

Gene Card

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