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Gene Card

Best human hits

SRSF4; SRSF5; SRSF6

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00007280

Gene Model ID

KH2012:KH.C5.40

Location

KhC5:3354086..3356162

Transcript Models and Sequences

  KH2012:KH.C5.40.v1.A.ND1-1
KH2012:KH.C5.40.v1.A.nonSL5-1
KH2012:KH.C5.40.v2.A.ND1-1
KH2012:KH.C5.40.v2.A.nonSL5-1
KH2012:KH.C5.40.v3.A.ND1-1
KH2012:KH.C5.40.v3.A.nonSL5-1
KH2012:KH.C5.40.v4.A.nonSL3-1
KH2012:KH.C5.40.v4.A.nonSL4-1
KH2012:KH.C5.40.v4.A.nonSL6-1
KH2012:KH.C5.40.v4.A.SL2-1

External Database Gene Card

External database links

1 result

Database Gene ID
NCBI Reference Sequence XM_002131187.4
Collections

Gateway full ORF

4 results

cien103431

Plate: VES86_C13

cien49033

Plate: VES77_L21

cima857179

Plate: VES64_J01

cima875198

Plate: VES67_E16

Gene collection 1 (N. Satoh)

1 result

ciad045n02

Plate: R1CiGC04l12

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
RRM_dom ProSiteProfiles RNA recognition motif domain
RRM_dom Pfam RNA recognition motif domain
Nucleotide-bd_a/b_plait_sf Gene3D Nucleotide-binding alpha-beta plait domain superfamily
RRM1_SRSF4-like CDD Serine/arginine-rich splicing factor SRSF4-like, RNA recognition motif 1
RBD_domain_sf SUPERFAMILY RNA-binding domain superfamily
RRM_dom SMART RNA recognition motif domain

GOSlim

22 results

GO Term Annotation Origin Type
mRNA splicing, via spliceosome Orthology biological process
nucleic acid binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
nucleolus Orthology cellular component
cytosol Orthology cellular component
mRNA processing Orthology biological process
RNA splicing Orthology biological process
nuclear speck Orthology cellular component
animal organ development Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
organic substance transport Orthology biological process
intracellular transport Orthology biological process
intracellular protein transport Orthology biological process
gene expression Orthology biological process
response to organic substance Orthology biological process
cellular response to organic substance Orthology biological process
positive regulation of gene expression Orthology biological process
protein kinase binding Orthology molecular function
cell cycle Orthology biological process

GO (Orthology)

22 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
mRNA splicing, via spliceosome Hs biological process
liver development Hs biological process
nucleic acid binding Hs molecular function
RNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
nucleolus Hs cellular component
cytosol Hs cellular component
termination of RNA polymerase II transcription Hs biological process
mRNA splice site selection Hs biological process
mRNA processing Hs biological process
RNA export from nucleus Hs biological process
mRNA export from nucleus Hs biological process
RNA splicing Hs biological process
nuclear speck Hs cellular component
mRNA 3'-end processing Hs biological process
response to insulin Hs biological process
cellular response to insulin stimulus Hs biological process
positive regulation of RNA splicing Hs biological process
protein kinase B binding Hs molecular function
regulation of cell cycle Hs biological process

GO (Blast)

11 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleic acid binding Hs molecular function 233 2.13e-73
RNA binding Hs molecular function 233 2.13e-73
protein binding Hs molecular function 233 2.13e-73
nucleus Hs cellular component 233 2.13e-73
nucleoplasm Hs cellular component 233 2.13e-73
nucleolus Hs cellular component 192 4.85e-60
cytosol Hs cellular component 192 4.85e-60
nuclear speck Hs cellular component 233 2.13e-73
pre-mRNA binding Hs molecular function 209 8.97e-66
protein kinase B binding Hs molecular function 192 4.85e-60
sequence-specific mRNA binding Hs molecular function 233 2.13e-73

GO (InterProScan)

1 result

GO Term Analysis Type e-value
nucleic acid binding SUPERFAMILY molecular function 4.48E-33

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