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GENE CARD

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Gene Card

Best human hits

CIR1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00007238

Gene Model ID

KH2012:KH.C5.362

Location

KhC5:1848152..1849664

Transcript Models and Sequences

  KH2012:KH.C5.362.v1.A.nonSL2-1
KH2012:KH.C5.362.v1.A.nonSL4-1
KH2012:KH.C5.362.v1.A.SL1-1
KH2012:KH.C5.362.v1.A.SL3-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000012247
NCBI Reference Sequence NM_001078200.1
Collections

Gateway full ORF

2 results

cien66468

Plate: VES80_C16

cien186969

Plate: VES99_L03

Gene collection 1 (N. Satoh)

1 result

ciad019k18

Plate: R1CiGC03i05

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

2 results

IPR Term Analysis Definition
CIR_N_dom SMART CBF1-interacting co-repressor CIR, N-terminal domain
CIR_N_dom Pfam CBF1-interacting co-repressor CIR, N-terminal domain

GOSlim

18 results

GO Term Annotation Origin Type
transcription factor activity, sequence-specific DNA binding Orthology molecular function
transcription corepressor activity Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
cytoplasm Orthology cellular component
centrosome Orthology cellular component
microtubule organizing center Orthology cellular component
cytoskeleton Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
mRNA processing Orthology biological process
RNA splicing Orthology biological process
nuclear speck Orthology cellular component
protein kinase binding Orthology molecular function
macromolecular complex Orthology cellular component
negative regulation of transcription, DNA-templated Orthology biological process
nucleoplasm part Orthology cellular component

GO (Orthology)

19 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
histone deacetylase complex Hs cellular component
transcription factor activity, sequence-specific DNA binding Hs molecular function
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function
transcription corepressor activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
cytoplasm Hs cellular component
centrosome Hs cellular component
microtubule organizing center Hs cellular component
cytoskeleton Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
mRNA processing Hs biological process
RNA splicing Hs biological process
nuclear speck Hs cellular component
protein kinase binding Hs molecular function
macromolecular complex Hs cellular component
negative regulation of transcription, DNA-templated Hs biological process

GO (Blast)

13 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
histone deacetylase complex Hs cellular component 220 1.53e-69
transcription factor activity, sequence-specific DNA binding Hs molecular function 220 1.53e-69
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function 220 1.53e-69
transcription corepressor activity Hs molecular function 220 1.53e-69
protein binding Hs molecular function 220 1.53e-69
nucleus Hs cellular component 220 1.53e-69
cytoplasm Hs cellular component 220 1.53e-69
centrosome Hs cellular component 220 1.53e-69
microtubule organizing center Hs cellular component 220 1.53e-69
cytoskeleton Hs cellular component 220 1.53e-69
nuclear speck Hs cellular component 220 1.53e-69
protein kinase binding Hs molecular function 220 1.53e-69
macromolecular complex Hs cellular component 220 1.53e-69

GO (InterProScan)

No result

GO Term Analysis Type e-value

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