Gene Card
Best human hits
SRSF1; SRSF3; SRSF7
Unique Gene ID
Cirobu.g00005366
Gene Model ID
KH2012:KH.C3.204
Location
KhC3:1186680..1188409
External database links
1 result
| Database | Gene ID |
|---|---|
| NCBI Reference Sequence | XM_002119623.4 |
Gateway full ORF
4 results
cien29915
Plate: VES75_J01
cima861739
Plate: VES64_L21
cima8110240
Plate: VES73_D23
cien128715
Plate: VES90_D11
Gene collection 1 (N. Satoh)
1 result
cicl009p17
Plate: R1CiGC09d01
n/a
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Click here to see the tree inference method
InterPro
5 results
| IPR Term | Analysis | Definition |
|---|---|---|
| RRM_dom | SMART | RNA recognition motif domain |
| RBD_domain_sf | SUPERFAMILY | RNA-binding domain superfamily |
| RRM_dom | Pfam | RNA recognition motif domain |
| RRM_dom | ProSiteProfiles | RNA recognition motif domain |
| Nucleotide-bd_a/b_plait_sf | Gene3D | Nucleotide-binding alpha-beta plait domain superfamily |
GOSlim
23 results
| GO Term | Annotation Origin | Type |
|---|---|---|
| mRNA splicing, via spliceosome | Orthology | biological process |
| nucleic acid binding | Orthology | molecular function |
| RNA binding | Orthology | molecular function |
| protein binding | Orthology | molecular function |
| nucleus | Orthology | cellular component |
| nucleoplasm | Orthology | cellular component |
| cytoplasm | Orthology | cellular component |
| mRNA processing | Orthology | biological process |
| zinc ion binding | Blast | molecular function |
| RNA splicing | Orthology | biological process |
| nuclear speck | Orthology | cellular component |
| metal ion binding | Blast | molecular function |
| extracellular exosome | Blast | cellular component |
| transcription from RNA polymerase II promoter | Orthology | biological process |
| organic substance transport | Orthology | biological process |
| intracellular transport | Orthology | biological process |
| intracellular protein transport | Orthology | biological process |
| gene expression | Orthology | biological process |
| enzyme binding | Orthology | molecular function |
| regulation of gene expression | Orthology | biological process |
| nuclear part | Blast | cellular component |
| macromolecular complex | Blast | cellular component |
| protein kinase binding | Blast | molecular function |
GO (Orthology)
18 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|---|---|
| mRNA splicing, via spliceosome | Hs | biological process |
| nucleic acid binding | Hs | molecular function |
| RNA binding | Hs | molecular function |
| protein binding | Hs | molecular function |
| nucleus | Hs | cellular component |
| nucleoplasm | Hs | cellular component |
| cytoplasm | Hs | cellular component |
| termination of RNA polymerase II transcription | Hs | biological process |
| mRNA processing | Hs | biological process |
| RNA export from nucleus | Hs | biological process |
| mRNA export from nucleus | Hs | biological process |
| RNA splicing | Hs | biological process |
| nuclear speck | Hs | cellular component |
| mRNA 3'-end processing | Hs | biological process |
| phospholipase binding | Hs | molecular function |
| regulation of mRNA splicing, via spliceosome | Hs | biological process |
| mRNA transport | Hs | biological process |
| sequence-specific mRNA binding | Hs | molecular function |
GO (Blast)
20 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| nucleic acid binding | Hs | molecular function | 144 | 1.63e-44 |
| RNA binding | Hs | molecular function | 144 | 1.63e-44 |
| mRNA binding | Hs | molecular function | 68.2 | 4.58e-14 |
| protein binding | Hs | molecular function | 144 | 1.63e-44 |
| nucleus | Hs | cellular component | 144 | 1.63e-44 |
| nucleoplasm | Hs | cellular component | 144 | 1.63e-44 |
| spliceosomal complex | Hs | cellular component | 68.2 | 4.58e-14 |
| cytoplasm | Hs | cellular component | 144 | 1.63e-44 |
| zinc ion binding | Hs | molecular function | 122 | 6.99e-35 |
| nuclear speck | Hs | cellular component | 144 | 1.63e-44 |
| protein domain specific binding | Hs | molecular function | 122 | 6.99e-35 |
| exon-exon junction complex | Hs | cellular component | 68.2 | 4.58e-14 |
| phospholipase binding | Hs | molecular function | 144 | 1.63e-44 |
| protein kinase B binding | Hs | molecular function | 68.2 | 4.58e-14 |
| DNA topoisomerase binding | Hs | molecular function | 68.2 | 4.58e-14 |
| metal ion binding | Hs | molecular function | 122 | 6.99e-35 |
| RS domain binding | Hs | molecular function | 68.2 | 4.58e-14 |
| extracellular exosome | Hs | cellular component | 122 | 6.99e-35 |
| catalytic step 2 spliceosome | Hs | cellular component | 68.2 | 4.58e-14 |
| sequence-specific mRNA binding | Hs | molecular function | 144 | 1.63e-44 |
GO (InterProScan)
1 result
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| nucleic acid binding | SUPERFAMILY | molecular function | 2.01E-24 |
