Aniseed - Gene card

Gene Card

Best human hits

ILF2; STRBP; ZFR2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00002177

Gene Model ID

KH2012:KH.C11.351

Location

KhC11:742624..747091

Transcript Models and Sequences

KH2012:KH.C11.351.v1.A.SL1-1
KH2012:KH.C11.351.v1.A.SL2-1
KH2012:KH.C11.351.v1.A.SL3-1
KH2012:KH.C11.351.v2.A.ND4-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000003447
NCBI Reference Sequence	NM_001078488.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cieg029i23

Plate: R1CiGC20g24

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
DZF_dom	ProSiteProfiles	DZF domain
DZF_dom	Pfam	DZF domain
2-5-oligoadenylate_synth_N	ProSiteProfiles	2-5-oligoadenylate synthetase, N-terminal
DZF_dom	SMART	DZF domain

GOSlim

21 results

GO Term	Annotation Origin	Type
nucleic acid binding	Blast	molecular function
DNA binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
ATP binding	Orthology	molecular function
extracellular region	Orthology	cellular component
nucleus	Orthology	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
immune response	Orthology	biological process
zinc ion binding	Blast	molecular function
microtubule cytoskeleton	Blast	cellular component
membrane	Orthology	cellular component
transferase activity	Orthology	molecular function
positive regulation of transcription, DNA-templated	Orthology	biological process
intracellular organelle part	Orthology	cellular component
cytoplasmic vesicle	Orthology	cellular component
endomembrane system	Orthology	cellular component
intracellular organelle lumen	Orthology	cellular component

GO (Orthology)

19 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
DNA binding	Hs	molecular function
RNA binding	Hs	molecular function
double-stranded RNA binding	Hs	molecular function
protein binding	Hs	molecular function
ATP binding	Hs	molecular function
extracellular region	Hs	cellular component
nucleus	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
immune response	Hs	biological process
membrane	Hs	cellular component
transferase activity	Hs	molecular function
intracellular ribonucleoprotein complex	Hs	cellular component
specific granule lumen	Hs	cellular component
positive regulation of transcription, DNA-templated	Hs	biological process
tertiary granule lumen	Hs	cellular component
ficolin-1-rich granule lumen	Hs	cellular component

GO (Blast)