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GENE CARD

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Gene Card

Best human hits

SLC6A1; SLC6A11; SLC6A13

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00001231

Gene Model ID

KH2012:KH.C1.942

Location

KhC1:7727743..7734641

Transcript Models and Sequences

  KH2012:KH.C1.942.v1.A.ND1-1
KH2012:KH.C1.942.v2.A.SL2-1

External Database Gene Card

External database links

4 results

Database Gene ID
ENSEMBL ENSCING00000007556
ENSEMBL ENSCING00000024462
NCBI Reference Sequence XM_002132032.4
NCBI Reference Sequence XM_018814160.1
Collections

Gateway full ORF

2 results

cima836282

Plate: VES62_C23

cima889267

Plate: VES70_O10

Gene collection 1 (N. Satoh)

1 result

cits037p08

Plate: R1CiGC34f12

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
Na/ntran_symport ProSiteProfiles Sodium:neurotransmitter symporter
Na/ntran_symport PRINTS Sodium:neurotransmitter symporter
SNS_sf SUPERFAMILY Sodium:neurotransmitter symporter superfamily
Na/ntran_symport Pfam Sodium:neurotransmitter symporter
Na/ntran_symport PANTHER Sodium:neurotransmitter symporter

GOSlim

15 results

GO Term Annotation Origin Type
cytoplasm Blast cellular component
plasma membrane Blast cellular component
integral component of plasma membrane Blast cellular component
cell surface Blast cellular component
membrane Blast cellular component
integral component of membrane Blast cellular component
axon Blast cellular component
cell projection Blast cellular component
neuron projection Blast cellular component
metal ion binding Blast molecular function
transmembrane transport Blast biological process
extracellular exosome Blast cellular component
sodium ion transport Blast biological process
organic substance transport Blast biological process
binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

16 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
transporter activity Hs molecular function 323 1.65e-103
neurotransmitter:sodium symporter activity Hs molecular function 323 1.65e-103
gamma-aminobutyric acid:sodium symporter activity Hs molecular function 323 1.65e-103
cytoplasm Hs cellular component 323 2.43e-103
plasma membrane Hs cellular component 323 1.65e-103
integral component of plasma membrane Hs cellular component 323 1.65e-103
cell surface Hs cellular component 321 8.48e-103
symporter activity Hs molecular function 323 1.65e-103
membrane Hs cellular component 323 1.65e-103
integral component of membrane Hs cellular component 323 1.65e-103
axon Hs cellular component 321 8.48e-103
neurotransmitter binding Hs molecular function 323 2.43e-103
cell projection Hs cellular component 323 2.43e-103
neuron projection Hs cellular component 321 8.48e-103
metal ion binding Hs molecular function 321 8.48e-103
extracellular exosome Hs cellular component 323 1.65e-103

GO (InterProScan)

3 results

GO Term Analysis Type e-value
neurotransmitter:sodium symporter activity PANTHER molecular function 1.9E-186
neurotransmitter transport PANTHER biological process 1.9E-186
integral component of membrane PANTHER cellular component 1.9E-186

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