Aniseed - Gene card

External Database Gene Card

External database links

4 results

Database	Gene ID
ENSEMBL	ENSCING00000012392
ENSEMBL	ENSCING00000020548
NCBI Reference Sequence	XM_002122565.3
NCBI Reference Sequence	XM_002128577.4

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cicl044p10

Plate: R1CiGC13e01

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
Pro_4_hyd_alph_N	Pfam	Prolyl 4-hydroxylase alpha-subunit, N-terminal
Oxoglu/Fe-dep_dioxygenase	ProSiteProfiles	Oxoglutarate/iron-dependent dioxygenase
Oxoglu/Fe-dep_dioxygenase	Pfam	Oxoglutarate/iron-dependent dioxygenase
Pro_4_hyd_alph	SMART	Prolyl 4-hydroxylase, alpha subunit
TPR-like_helical_dom_sf	SUPERFAMILY	Tetratricopeptide-like helical domain superfamily
TPR-like_helical_dom_sf	Gene3D	Tetratricopeptide-like helical domain superfamily

GOSlim

21 results

GO Term	Annotation Origin	Type
iron ion binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleoplasm	Orthology	cellular component
mitochondrion	Orthology	cellular component
endoplasmic reticulum	Orthology	cellular component
endoplasmic reticulum lumen	Orthology	cellular component
cytosol	Orthology	cellular component
membrane	Orthology	cellular component
identical protein binding	Orthology	molecular function
intracellular membrane-bounded organelle	Orthology	cellular component
metal ion binding	Orthology	molecular function
oxidation-reduction process	Orthology	biological process
catalytic activity	Orthology	molecular function
cellular protein modification process	Orthology	biological process
macromolecular complex	Orthology	cellular component
cellular metabolic process	Orthology	biological process
endoplasmic reticulum part	Orthology	cellular component
extracellular matrix organization	Orthology	biological process
small molecule binding	Orthology	molecular function
anion binding	Orthology	molecular function
coenzyme binding	Orthology	molecular function

GO (Orthology)

25 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
procollagen-proline 4-dioxygenase activity	Hs	molecular function
iron ion binding	Hs	molecular function
protein binding	Hs	molecular function
collagen trimer	Hs	cellular component
nucleoplasm	Hs	cellular component
mitochondrion	Hs	cellular component
endoplasmic reticulum	Hs	cellular component
endoplasmic reticulum lumen	Hs	cellular component
cytosol	Hs	cellular component
electron carrier activity	Hs	molecular function
membrane	Hs	cellular component
procollagen-proline 4-dioxygenase complex	Hs	cellular component
oxidoreductase activity	Hs	molecular function
oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Hs	molecular function
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Hs	molecular function
peptidyl-proline hydroxylation to 4-hydroxy-L-proline	Hs	biological process
peptidyl-proline hydroxylation	Hs	biological process
electron transport chain	Hs	biological process
collagen fibril organization	Hs	biological process
L-ascorbic acid binding	Hs	molecular function
identical protein binding	Hs	molecular function
intracellular membrane-bounded organelle	Hs	cellular component
metal ion binding	Hs	molecular function
dioxygenase activity	Hs	molecular function
oxidation-reduction process	Hs	biological process

GO (Blast)

20 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
procollagen-proline 4-dioxygenase activity	Hs	molecular function	494	1.53e-171
iron ion binding	Hs	molecular function	494	1.53e-171
protein binding	Hs	molecular function	494	1.53e-171
collagen trimer	Hs	cellular component	481	1.15e-166
nucleoplasm	Hs	cellular component	494	1.53e-171
mitochondrion	Hs	cellular component	481	1.15e-166
endoplasmic reticulum	Hs	cellular component	494	1.53e-171
endoplasmic reticulum lumen	Hs	cellular component	494	1.53e-171
cytosol	Hs	cellular component	494	1.53e-171
electron carrier activity	Hs	molecular function	494	1.53e-171
membrane	Hs	cellular component	481	1.15e-166
procollagen-proline 4-dioxygenase complex	Hs	cellular component	481	1.15e-166
oxidoreductase activity	Hs	molecular function	494	1.53e-171
oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Hs	molecular function	494	1.53e-171
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Hs	molecular function	494	1.53e-171
L-ascorbic acid binding	Hs	molecular function	494	1.53e-171
identical protein binding	Hs	molecular function	481	1.15e-166
intracellular membrane-bounded organelle	Hs	cellular component	494	1.53e-171
metal ion binding	Hs	molecular function	494	1.53e-171
dioxygenase activity	Hs	molecular function	494	1.53e-171

GO (InterProScan)

9 results

GO Term	Analysis	Type	e-value
procollagen-proline 4-dioxygenase activity	Pfam	molecular function	6.4E-39
iron ion binding	SMART	molecular function	5.6E-65
protein binding	Gene3D	molecular function	2.1E-38
endoplasmic reticulum	Pfam	cellular component	6.4E-39
oxidoreductase activity	Pfam	molecular function	5.0E-16
oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Pfam	molecular function	6.4E-39
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	SMART	molecular function	5.6E-65
L-ascorbic acid binding	SMART	molecular function	5.6E-65
oxidation-reduction process	SMART	biological process	5.6E-65

Gene Card

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