Aniseed - Gene card

Gene Card

Best human hits

TPM2; TPM3; TPM4

Species

H.roretzi

Unique Gene ID

Harore.g00012283

Gene Model ID

Harore.CG.MTP2014.S70.g12283

Location

S70:226217..229244

Transcript Models and Sequences

Harore.CG.MTP2014.S70.g12283.01.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

2 results

IPR Term	Analysis	Definition
Tropomyosin	PRINTS	Tropomyosin
Tropomyosin	Pfam	Tropomyosin

GOSlim

19 results

GO Term	Annotation Origin	Type
actin binding	Blast	molecular function
calcium ion binding	Blast	molecular function
protein binding	Blast	molecular function
cytoplasm	Blast	cellular component
cytosol	Blast	cellular component
cytoskeleton	Blast	cellular component
focal adhesion	Blast	cellular component
membrane	Blast	cellular component
identical protein binding	Blast	molecular function
protein homodimerization activity	Blast	molecular function
metal ion binding	Blast	molecular function
protein heterodimerization activity	Blast	molecular function
actin filament binding	Blast	molecular function
extracellular exosome	Blast	cellular component
cytoskeletal part	Blast	cellular component
macromolecular complex	Blast	cellular component
cytoplasmic part	Blast	cellular component
structural molecule activity	Blast	molecular function
cell periphery	Blast	cellular component

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

22 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
stress fiber	Hs	cellular component	142	1.33e-41
podosome	Hs	cellular component	142	1.33e-41
actin binding	Hs	molecular function	144	6.70e-42
calcium ion binding	Hs	molecular function	142	1.33e-41
protein binding	Hs	molecular function	142	1.33e-41
cytoplasm	Hs	cellular component	144	6.70e-42
cytosol	Hs	cellular component	144	6.70e-42
cytoskeleton	Hs	cellular component	144	6.70e-42
muscle thin filament tropomyosin	Hs	cellular component	144	6.70e-42
actin filament	Hs	cellular component	144	6.70e-42
focal adhesion	Hs	cellular component	142	1.33e-41
structural constituent of muscle	Hs	molecular function	144	6.70e-42
actin cytoskeleton	Hs	cellular component	144	6.70e-42
membrane	Hs	cellular component	142	1.33e-41
cortical cytoskeleton	Hs	cellular component	142	1.33e-41
filamentous actin	Hs	cellular component	142	1.33e-41
identical protein binding	Hs	molecular function	144	6.70e-42
protein homodimerization activity	Hs	molecular function	144	6.70e-42
metal ion binding	Hs	molecular function	142	1.33e-41
protein heterodimerization activity	Hs	molecular function	144	6.70e-42
actin filament binding	Hs	molecular function	144	6.70e-42
extracellular exosome	Hs	cellular component	142	1.33e-41

GO (InterProScan)

No result

GO Term	Analysis	Type	e-value