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GENE CARD

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Gene Card

Best human hits

GAR1

Species

H.roretzi

Unique Gene ID

Harore.g00012156

Gene Model ID

Harore.CG.MTP2014.S361.g12156

Location

S361:9000..9588

Transcript Models and Sequences

  Harore.CG.MTP2014.S361.g12156.01.t

External Database Gene Card

External database links

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Collections
WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
H/ACA_rnp_Gar1 ProDom H/ACA ribonucleoprotein complex, subunit Gar1
Transl_B-barrel_sf SUPERFAMILY Translation protein, beta-barrel domain superfamily
H/ACA_rnp_Gar1 PANTHER H/ACA ribonucleoprotein complex, subunit Gar1
Gar1/Naf1_Cbf5-bd_sf Gene3D H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domain
H/ACA_rnp_Gar1/Naf1 Pfam H/ACA ribonucleoprotein complex, subunit Gar1/Naf1

GOSlim

15 results

GO Term Annotation Origin Type
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
nucleolus Orthology cellular component
RNA processing Orthology biological process
intracellular non-membrane-bounded organelle Orthology cellular component
nuclear lumen Orthology cellular component
RNA metabolic process Orthology biological process
nuclear part Orthology cellular component
macromolecular complex Orthology cellular component
organelle organization Orthology biological process
transferase activity, transferring phosphorus-containing groups Orthology molecular function
DNA metabolic process Orthology biological process
nuclear body Orthology cellular component

GO (Orthology)

21 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
snoRNA guided rRNA pseudouridine synthesis Hs biological process
nuclear chromosome, telomeric region Hs cellular component
pseudouridine synthesis Hs biological process
fibrillar center Hs cellular component
RNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
telomerase holoenzyme complex Hs cellular component
nucleolus Hs cellular component
rRNA processing Hs biological process
telomere maintenance via telomerase Hs biological process
Cajal body Hs cellular component
intracellular ribonucleoprotein complex Hs cellular component
rRNA pseudouridine synthesis Hs biological process
box H/ACA snoRNP complex Hs cellular component
box H/ACA snoRNA binding Hs molecular function
ribosome biogenesis Hs biological process
telomerase RNA binding Hs molecular function
box H/ACA scaRNP complex Hs cellular component
box H/ACA telomerase RNP complex Hs cellular component

GO (Blast)

15 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nuclear chromosome, telomeric region Hs cellular component 155 7.65e-48
fibrillar center Hs cellular component 155 7.65e-48
RNA binding Hs molecular function 155 7.65e-48
protein binding Hs molecular function 155 7.65e-48
nucleus Hs cellular component 155 7.65e-48
nucleoplasm Hs cellular component 155 7.65e-48
telomerase holoenzyme complex Hs cellular component 155 7.65e-48
nucleolus Hs cellular component 155 7.65e-48
Cajal body Hs cellular component 155 7.65e-48
intracellular ribonucleoprotein complex Hs cellular component 155 7.65e-48
box H/ACA snoRNP complex Hs cellular component 155 7.65e-48
box H/ACA snoRNA binding Hs molecular function 155 7.65e-48
telomerase RNA binding Hs molecular function 155 7.65e-48
box H/ACA scaRNP complex Hs cellular component 155 7.65e-48
box H/ACA telomerase RNP complex Hs cellular component 155 7.65e-48

GO (InterProScan)

3 results

GO Term Analysis Type e-value
pseudouridine synthesis PANTHER biological process 9.1E-62
box H/ACA snoRNP complex PANTHER cellular component 9.1E-62
ribosome biogenesis PANTHER biological process 9.1E-62

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