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GENE CARD

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Gene Card

Best human hits

TRIM2; TRIM3; TRIM71

Species

C.savignyi

Unique Gene ID

Cisavi.g00007643

Gene Model ID

Cisavi.CG.ENS81.R435.235416-244353

Location

R435:235415..244353

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

12 results

IPR Term Analysis Definition
Znf_B-box Pfam B-box-type zinc finger
6-blade_b-propeller_TolB-like Gene3D Six-bladed beta-propeller, TolB-like
Znf_RING_CS ProSitePatterns Zinc finger, RING-type, conserved site
NHL_repeat_subgr ProSiteProfiles NHL repeat, subgroup
Znf_RING/FYVE/PHD Gene3D Zinc finger, RING/FYVE/PHD-type
Znf_B-box SMART B-box-type zinc finger
Znf_B-box CDD B-box-type zinc finger
NHL_repeat Pfam NHL repeat
Znf_B-box ProSiteProfiles B-box-type zinc finger
Znf_RING SMART Zinc finger, RING-type
Znf-RING_LisH Pfam RING-type zinc-finger, LisH dimerisation motif
Znf_RING ProSiteProfiles Zinc finger, RING-type

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

18 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
P-body Hs cellular component 142 1.08e-34
RNA binding Hs molecular function 142 1.08e-34
ubiquitin-protein transferase activity Hs molecular function 304 7.16e-91
protein binding Hs molecular function 304 7.16e-91
intracellular Hs cellular component 304 7.16e-91
cytoplasm Hs cellular component 304 7.16e-91
endosome Hs cellular component 287 4.57e-85
early endosome Hs cellular component 287 4.57e-85
Golgi apparatus Hs cellular component 287 4.57e-85
protein C-terminus binding Hs molecular function 287 4.57e-85
zinc ion binding Hs molecular function 304 7.16e-91
transferase activity Hs molecular function 304 7.16e-91
translation repressor activity Hs molecular function 142 1.08e-34
dendrite Hs cellular component 287 4.57e-85
miRNA binding Hs molecular function 142 1.08e-34
cell projection Hs cellular component 287 4.57e-85
metal ion binding Hs molecular function 304 7.16e-91
ubiquitin protein ligase activity Hs molecular function 287 4.57e-85

GO (InterProScan)

3 results

GO Term Analysis Type e-value
protein binding Pfam molecular function 5.9E-7
intracellular CDD cellular component 2.62074E-10
zinc ion binding CDD molecular function 2.62074E-10