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GENE CARD

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Gene Card

Best human hits

SOX14; SOX2; SOX21

Species

B.schlosseri

Unique Gene ID

Boschl.g00049627

Gene Model ID

Boschl.CG.Botznik2013.chrUn.g49627

Location

chrUn:306981680..306983069

Transcript Models and Sequences

  Boschl.CG.Botznik2013.chrUn.g49627.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
HMG_box_dom ProSiteProfiles High mobility group box domain
HMG_box_dom_sf SUPERFAMILY High mobility group box domain superfamily
HMG_box_dom Pfam High mobility group box domain
HMG_box_dom SMART High mobility group box domain
HMG_box_dom_sf Gene3D High mobility group box domain superfamily

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

24 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
negative regulation of transcription from RNA polymerase II promoter Hs biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function
DNA binding Hs molecular function
chromatin binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
transcription from RNA polymerase II promoter Hs biological process
nervous system development Hs biological process
visual perception Hs biological process
entrainment of circadian clock Hs biological process
sequence-specific DNA binding Hs molecular function
skin development Hs biological process
nuclear transcription factor complex Hs cellular component
negative regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
protein heterodimerization activity Hs molecular function
stem cell differentiation Hs biological process
regulation of neuron migration Hs biological process

GO (Blast)

18 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
transcription regulatory region sequence-specific DNA binding Hs molecular function 133 8.67e-39
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 139 1.76e-41
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 139 1.76e-41
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 139 1.76e-41
DNA binding Hs molecular function 139 1.76e-41
chromatin binding Hs molecular function 137 4.35e-41
transcription factor activity, sequence-specific DNA binding Hs molecular function 139 1.76e-41
protein binding Hs molecular function 137 4.35e-41
nucleus Hs cellular component 139 1.76e-41
nucleoplasm Hs cellular component 133 8.67e-39
transcription factor complex Hs cellular component 133 8.67e-39
cytoplasm Hs cellular component 133 8.67e-39
cytosol Hs cellular component 133 8.67e-39
miRNA binding Hs molecular function 133 8.67e-39
sequence-specific DNA binding Hs molecular function 137 4.35e-41
transcription regulatory region DNA binding Hs molecular function 133 8.67e-39
nuclear transcription factor complex Hs cellular component 137 4.35e-41
protein heterodimerization activity Hs molecular function 137 4.35e-41

GO (InterProScan)

No result

GO Term Analysis Type e-value

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