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GENE CARD

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Gene Card

Best human hits

IGHMBP2; SETX; UPF1

Species

B.schlosseri

Unique Gene ID

Boschl.g00013762

Gene Model ID

Boschl.CG.Botznik2013.chrUn.g13762

Location

chrUn:88795128..88796590

Transcript Models and Sequences

  Boschl.CG.Botznik2013.chrUn.g13762.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
Helicase_ATP-bd SMART Helicase superfamily 1/2, ATP-binding domain
AAA+_ATPase SMART AAA+ ATPase domain
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
SMUBP-2/Hcs1-like TIGRFAM Helicase SMUBP-2/Hcs1-like

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

34 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
tRNA binding Hs molecular function
nucleotide binding Hs molecular function
nucleic acid binding Hs molecular function
DNA binding Hs molecular function
DNA helicase activity Hs molecular function
single-stranded DNA binding Hs molecular function
RNA binding Hs molecular function
helicase activity Hs molecular function
protein binding Hs molecular function
ATP binding Hs molecular function
nucleus Hs cellular component
cytoplasm Hs cellular component
DNA replication Hs biological process
DNA repair Hs biological process
DNA recombination Hs biological process
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
translation Hs biological process
DNA-dependent ATPase activity Hs molecular function
transcription factor binding Hs molecular function
RNA-dependent ATPase activity Hs molecular function
zinc ion binding Hs molecular function
membrane Hs cellular component
hydrolase activity Hs molecular function
axon Hs cellular component
growth cone Hs cellular component
intracellular ribonucleoprotein complex Hs cellular component
DNA duplex unwinding Hs biological process
ATP-dependent 5'-3' RNA helicase activity Hs molecular function
cell projection Hs cellular component
ribosome binding Hs molecular function
ATP-dependent 5'-3' DNA helicase activity Hs molecular function
metal ion binding Hs molecular function
protein homooligomerization Hs biological process

GO (Blast)

44 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
tRNA binding Hs molecular function 426 1.36e-139
nucleotide binding Hs molecular function 426 1.36e-139
nuclear chromosome Hs cellular component 105 1.31e-23
chromosome, telomeric region Hs cellular component 105 1.31e-23
nuclear chromosome, telomeric region Hs cellular component 124 3.91e-30
chromatin Hs cellular component 124 3.91e-30
P-body Hs cellular component 124 3.91e-30
transcription termination site sequence-specific DNA binding Hs molecular function 105 1.31e-23
nucleic acid binding Hs molecular function 426 1.36e-139
DNA binding Hs molecular function 426 1.36e-139
DNA helicase activity Hs molecular function 426 1.36e-139
chromatin binding Hs molecular function 124 3.91e-30
single-stranded DNA binding Hs molecular function 426 1.36e-139
RNA binding Hs molecular function 426 1.36e-139
ATP-dependent RNA helicase activity Hs molecular function 124 3.91e-30
helicase activity Hs molecular function 426 1.36e-139
protein binding Hs molecular function 426 1.36e-139
ATP binding Hs molecular function 426 1.36e-139
nucleus Hs cellular component 426 1.36e-139
nucleoplasm Hs cellular component 124 3.91e-30
chromosome Hs cellular component 105 1.31e-23
nucleolus Hs cellular component 105 1.31e-23
cytoplasm Hs cellular component 426 1.36e-139
cytosol Hs cellular component 124 3.91e-30
DNA-dependent ATPase activity Hs molecular function 426 1.36e-139
transcription factor binding Hs molecular function 426 1.36e-139
RNA-dependent ATPase activity Hs molecular function 426 1.36e-139
zinc ion binding Hs molecular function 426 1.36e-139
membrane Hs cellular component 426 1.36e-139
nuclear body Hs cellular component 105 1.31e-23
hydrolase activity Hs molecular function 426 1.36e-139
axon Hs cellular component 426 1.36e-139
growth cone Hs cellular component 426 1.36e-139
intracellular ribonucleoprotein complex Hs cellular component 426 1.36e-139
ATP-dependent 5'-3' RNA helicase activity Hs molecular function 426 1.36e-139
exon-exon junction complex Hs cellular component 124 3.91e-30
telomeric DNA binding Hs molecular function 124 3.91e-30
identical protein binding Hs molecular function 105 1.31e-23
cell projection Hs cellular component 426 1.36e-139
ribosome binding Hs molecular function 426 1.36e-139
ATP-dependent 5'-3' DNA helicase activity Hs molecular function 426 1.36e-139
supraspliceosomal complex Hs cellular component 124 3.91e-30
intercellular bridge Hs cellular component 105 1.31e-23
metal ion binding Hs molecular function 426 1.36e-139

GO (InterProScan)

2 results

GO Term Analysis Type e-value
DNA binding TIGRFAM molecular function 2.4E-114
ATP binding TIGRFAM molecular function 2.4E-114

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