Login
Help

GENE CARD

Submit your Data

  1. Gene 'Boschl.CG.Botznik201...'

Gene Card

Best human hits

BNC1; BNC2; SALL1

Species

B.schlosseri

Unique Gene ID

Boschl.g00003540

Gene Model ID

Boschl.CG.Botznik2013.chrUn.g03540

Location

chrUn:22847229..22848435

Transcript Models and Sequences

  Boschl.CG.Botznik2013.chrUn.g03540.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree

 Click here to see the tree inference method

Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
Znf_C2H2_sf SUPERFAMILY Zinc finger C2H2 superfamily
Znf_C2H2_type ProSiteProfiles Zinc finger C2H2-type
Znf_C2H2_type ProSitePatterns Zinc finger C2H2-type
Znf_C2H2_type SMART Zinc finger C2H2-type

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

20 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
heterochromatin Hs cellular component 40.8 0.001
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 40.8 0.001
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 105 2.03e-24
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 40.8 0.001
nucleic acid binding Hs molecular function 119 7.19e-29
DNA binding Hs molecular function 119 7.19e-29
transcription factor activity, sequence-specific DNA binding Hs molecular function 105 2.03e-24
histone deacetylase activity Hs molecular function 40.8 0.001
protein binding Hs molecular function 40.8 0.001
nucleus Hs cellular component 119 7.19e-29
nucleoplasm Hs cellular component 119 7.19e-29
cytoplasm Hs cellular component 105 2.03e-24
beta-catenin binding Hs molecular function 40.8 0.001
zinc ion binding Hs molecular function 119 7.19e-29
chromocenter Hs cellular component 40.8 0.001
NuRD complex Hs cellular component 40.8 0.001
intracellular membrane-bounded organelle Hs cellular component 105 2.03e-24
sequence-specific DNA binding Hs molecular function 40.8 0.001
transcription regulatory region DNA binding Hs molecular function 40.8 0.001
metal ion binding Hs molecular function 119 7.19e-29

GO (InterProScan)

1 result

GO Term Analysis Type e-value
nucleic acid binding SMART molecular function 0.0043