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GENE CARD

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  1. Gene 'Phmamm.CG.MTP2014.S4...'

Gene Card

Best human hits

RDH12; RDH13; RDH14

Species

P.mammillata

Unique Gene ID

Phmamm.g00018405

Gene Model ID

Phmamm.CG.MTP2014.S4439.g18405

Location

S4439:2279..5187

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S4439.g18405.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

6 results

AHC0AAA14YE16

Plate: Plate_14_E16

AHC0AAA47YM01

Plate: Plate_47_M01

AHC0AAA107YL03

Plate: Plate_107_L03

AHC0AAA114YH08

Plate: Plate_114_H08

AHC0AAA81YI18

Plate: Plate_81_I18

AHC0AAA224YC11

Plate: Plate_224_C11

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term Analysis Definition
SDR_fam Pfam Short-chain dehydrogenase/reductase SDR
NAD(P)-bd_dom_sf SUPERFAMILY NAD(P)-binding domain superfamily
SDR_fam PRINTS Short-chain dehydrogenase/reductase SDR

GOSlim

25 results

GO Term Annotation Origin Type
protein binding Orthology molecular function
intracellular Orthology cellular component
nucleus Blast cellular component
mitochondrion Orthology cellular component
mitochondrial inner membrane Orthology cellular component
lysosomal membrane Blast cellular component
endoplasmic reticulum Orthology cellular component
endoplasmic reticulum membrane Orthology cellular component
visual perception Orthology biological process
membrane Orthology cellular component
response to stimulus Orthology biological process
oxidation-reduction process Orthology biological process
intracellular protein transport Orthology biological process
integral component of membrane Orthology cellular component
cellular metabolic process Orthology biological process
organic substance metabolic process Orthology biological process
catalytic activity Orthology molecular function
anatomical structure formation involved in morphogenesis Orthology biological process
animal organ development Orthology biological process
neuron development Orthology biological process
anatomical structure morphogenesis Orthology biological process
plasma membrane region Orthology cellular component
neuron part Orthology cellular component
G-protein coupled receptor signaling pathway Orthology biological process
regulation of signal transduction Orthology biological process

GO (Orthology)

26 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
retinoid metabolic process Hs biological process
retinol dehydrogenase activity Hs molecular function
protein binding Hs molecular function
intracellular Hs cellular component
mitochondrion Hs cellular component
mitochondrial inner membrane Hs cellular component
endoplasmic reticulum Hs cellular component
endoplasmic reticulum membrane Hs cellular component
visual perception Hs biological process
retina layer formation Hs biological process
membrane Hs cellular component
oxidoreductase activity Hs molecular function
eye photoreceptor cell development Hs biological process
retinol metabolic process Hs biological process
photoreceptor cell maintenance Hs biological process
response to stimulus Hs biological process
NADP-retinol dehydrogenase activity Hs molecular function
oxidation-reduction process Hs biological process
photoreceptor inner segment membrane Hs cellular component
photoreceptor inner segment Hs cellular component
intracellular protein transport Hs biological process
integral component of membrane Hs cellular component
adaptation of rhodopsin mediated signaling Hs biological process
vesicle-mediated transport Hs biological process
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Hs molecular function
retinal metabolic process Hs biological process

GO (Blast)

14 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
retinol dehydrogenase activity Hs molecular function 263 3.06e-87
protein binding Hs molecular function 263 3.06e-87
intracellular Hs cellular component 263 3.06e-87
nucleus Hs cellular component 271 3.40e-90
mitochondrion Hs cellular component 271 3.40e-90
mitochondrial inner membrane Hs cellular component 263 5.46e-87
lysosomal membrane Hs cellular component 271 3.40e-90
endoplasmic reticulum Hs cellular component 271 3.40e-90
endoplasmic reticulum membrane Hs cellular component 271 3.40e-90
alcohol dehydrogenase (NADP+) activity Hs molecular function 271 3.40e-90
membrane Hs cellular component 271 3.40e-90
oxidoreductase activity Hs molecular function 271 3.40e-90
NADP-retinol dehydrogenase activity Hs molecular function 271 3.40e-90
photoreceptor inner segment membrane Hs cellular component 263 3.06e-87

GO (InterProScan)

No result

GO Term Analysis Type e-value