Login
Help

GENE CARD

Submit your Data

  1. > 
  2. > 
  3. > 
  4. Gene 'Phmamm.CG.MTP2014.S2...'

Gene Card

Best human hits

AP002748.4; BBS1

Species

P.mammillata

Unique Gene ID

Phmamm.g00017336

Gene Model ID

Phmamm.CG.MTP2014.S2992.g17336

Location

S2992:3133..4939

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S2992.g17336.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

7 results

AHC0AAA16YN06

Plate: Plate_16_N06

AHC0AAA38YL19

Plate: Plate_38_L19

AHC0AAA149YE14

Plate: Plate_149_E14

AHC0AAA85YP18

Plate: Plate_85_P18

AHC0AAA171YL23

Plate: Plate_171_L23

AHC0AAA175YM19

Plate: Plate_175_M19

AHC0AAA38YL17

Plate: Plate_38_L17

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree
 Click here to see the tree inference method

Gene Annotations

InterPro

3 results

IPR Term Analysis Definition
BBS1 PANTHER Bardet-Biedl syndrome 1 protein
WD40_repeat_dom_sf SUPERFAMILY WD40-repeat-containing domain superfamily
BBS1_N Pfam Bardet-Biedl syndrome 1, N-terminal

GOSlim

27 results

GO Term Annotation Origin Type
protein binding Orthology molecular function
cytoplasm Orthology cellular component
centrosome Orthology cellular component
microtubule organizing center Orthology cellular component
cytosol Orthology cellular component
cytoskeleton Orthology cellular component
plasma membrane Orthology cellular component
visual perception Orthology biological process
protein transport Orthology biological process
membrane Orthology cellular component
cell projection organization Orthology biological process
cell projection Orthology cellular component
response to stimulus Orthology biological process
transcription factor binding Orthology molecular function
receptor binding Orthology molecular function
organelle Orthology cellular component
plasma membrane region Orthology cellular component
macromolecular complex Orthology cellular component
cell projection part Orthology cellular component
microtubule Orthology cellular component
cytoplasmic part Orthology cellular component
sensory perception Orthology biological process
organelle part Orthology cellular component
establishment of protein localization to membrane Orthology biological process
cell projection membrane Orthology cellular component
bounding membrane of organelle Orthology cellular component
protein localization to organelle Orthology biological process

GO (Orthology)

28 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
RNA polymerase II repressing transcription factor binding Hs molecular function
retina homeostasis Hs biological process
patched binding Hs molecular function
smoothened binding Hs molecular function
protein binding Hs molecular function
cytoplasm Hs cellular component
centrosome Hs cellular component
microtubule organizing center Hs cellular component
cytosol Hs cellular component
cytoskeleton Hs cellular component
plasma membrane Hs cellular component
cilium Hs cellular component
axoneme Hs cellular component
visual perception Hs biological process
sensory perception of smell Hs biological process
protein transport Hs biological process
membrane Hs cellular component
cell projection organization Hs biological process
BBSome Hs cellular component
ciliary basal body Hs cellular component
cell projection Hs cellular component
Golgi to plasma membrane protein transport Hs biological process
photoreceptor cell maintenance Hs biological process
response to stimulus Hs biological process
ciliary membrane Hs cellular component
cilium assembly Hs biological process
protein localization to cilium Hs biological process
non-motile cilium assembly Hs biological process

GO (Blast)

17 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II repressing transcription factor binding Hs molecular function 529 0.0
patched binding Hs molecular function 529 0.0
smoothened binding Hs molecular function 529 0.0
protein binding Hs molecular function 529 0.0
cytoplasm Hs cellular component 529 0.0
centrosome Hs cellular component 529 0.0
microtubule organizing center Hs cellular component 529 0.0
cytosol Hs cellular component 529 0.0
cytoskeleton Hs cellular component 529 0.0
plasma membrane Hs cellular component 529 0.0
cilium Hs cellular component 529 0.0
axoneme Hs cellular component 529 0.0
membrane Hs cellular component 529 0.0
BBSome Hs cellular component 529 0.0
ciliary basal body Hs cellular component 529 0.0
cell projection Hs cellular component 529 0.0
ciliary membrane Hs cellular component 529 0.0

GO (InterProScan)

3 results

GO Term Analysis Type e-value
protein binding SUPERFAMILY molecular function 1.28E-7
BBSome PANTHER cellular component 1.5E-223
non-motile cilium assembly PANTHER biological process 1.5E-223

Back to Top