Aniseed - Gene card

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Genoscope Yasuo Villefranche

1 result

AHC0AAA183YA13

Plate: Plate_183_A13

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

2 results

Phmamm.REG.CG.MTP2014.S2332:6677-7993|Lhx3/4 REG00001425 [ regulatory_region (enhancer) ]

Phmamm.REG.CG.MTP2014.S2332:10795-11099|Lhx3/4 REG00001426 [ regulatory_region (extended_promoter) ]

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term	Analysis	Definition
Znf_LIM	ProSiteProfiles	Zinc finger, LIM-type
Homeobox_dom	CDD	Homeobox domain
Homeobox_dom	ProSiteProfiles	Homeobox domain
Znf_LIM	ProSitePatterns	Zinc finger, LIM-type
Homeobox_dom	Pfam	Homeobox domain
Znf_LIM	Pfam	Zinc finger, LIM-type
Znf_LIM	SMART	Zinc finger, LIM-type
Homeobox-like_sf	SUPERFAMILY	Homeobox-like domain superfamily

GOSlim

28 results

GO Term	Annotation Origin	Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Orthology	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Orthology	molecular function
DNA binding	Orthology	molecular function
transcription factor activity, sequence-specific DNA binding	Blast	molecular function
transcription corepressor activity	Blast	molecular function
protein binding	Orthology	molecular function
intracellular	Orthology	cellular component
nucleus	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
transcription from RNA polymerase II promoter	Orthology	biological process
multicellular organism development	Orthology	biological process
anatomical structure morphogenesis	Orthology	biological process
cell differentiation	Orthology	biological process
macromolecular complex	Orthology	cellular component
negative regulation of apoptotic process	Orthology	biological process
sequence-specific DNA binding	Orthology	molecular function
positive regulation of transcription, DNA-templated	Orthology	biological process
positive regulation of transcription from RNA polymerase II promoter	Orthology	biological process
metal ion binding	Orthology	molecular function
transcription factor binding	Orthology	molecular function
intracellular part	Orthology	cellular component
axon guidance	Orthology	biological process
animal organ development	Orthology	biological process
neuron differentiation	Orthology	biological process
central nervous system development	Orthology	biological process
brain development	Orthology	biological process

GO (Orthology)

29 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
transcription factor activity, RNA polymerase II transcription factor binding	Hs	molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function
RNA polymerase II transcription factor binding	Hs	molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function
DNA binding	Hs	molecular function
protein binding	Hs	molecular function
intracellular	Hs	cellular component
nucleus	Hs	cellular component
transcription factor complex	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
transcription from RNA polymerase II promoter	Hs	biological process
motor neuron axon guidance	Hs	biological process
animal organ morphogenesis	Hs	biological process
dorsal/ventral pattern formation	Hs	biological process
spinal cord motor neuron cell fate specification	Hs	biological process
ventral spinal cord interneuron specification	Hs	biological process
spinal cord association neuron differentiation	Hs	biological process
pituitary gland development	Hs	biological process
cell differentiation	Hs	biological process
lung development	Hs	biological process
negative regulation of apoptotic process	Hs	biological process
sequence-specific DNA binding	Hs	molecular function
positive regulation of transcription, DNA-templated	Hs	biological process
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
metal ion binding	Hs	molecular function
inner ear development	Hs	biological process

GO (Blast)

16 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	276	4.45e-90
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	277	9.86e-91
transcription factor activity, RNA polymerase II transcription factor binding	Hs	molecular function	276	4.45e-90
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	276	4.45e-90
RNA polymerase II transcription factor binding	Hs	molecular function	276	4.45e-90
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function	277	9.86e-91
DNA binding	Hs	molecular function	277	9.86e-91
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	202	1.75e-61
transcription corepressor activity	Hs	molecular function	202	1.75e-61
protein binding	Hs	molecular function	277	9.86e-91
intracellular	Hs	cellular component	277	9.86e-91
nucleus	Hs	cellular component	277	9.86e-91
transcription factor complex	Hs	cellular component	276	4.45e-90
macromolecular complex	Hs	cellular component	202	1.75e-61
sequence-specific DNA binding	Hs	molecular function	277	9.86e-91
metal ion binding	Hs	molecular function	277	9.86e-91

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
DNA binding	CDD	molecular function	6.67755E-10

Gene Card

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