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GENE CARD

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  1. Gene 'Phmamm.CG.MTP2014.S1...'

Gene Card

Best human hits

SP7; SP8; SP9

Species

P.mammillata

Unique Gene ID

Phmamm.g00014629

Gene Model ID

Phmamm.CG.MTP2014.S1371.g14629

Location

S1371:4510..6240

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S1371.g14629.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

10 results

AHC0AAA37YM24

Plate: Plate_37_M24

AHC0AAA38YM15

Plate: Plate_38_M15

AHC0AAA138YF17

Plate: Plate_138_F17

AHC0AAA144YG05

Plate: Plate_144_G05

AHC0AAA152YH14

Plate: Plate_152_H14

AHC0AAA167YO18

Plate: Plate_167_O18

AHC0AAA195YJ23

Plate: Plate_195_J23

AHC0AAA204YE02

Plate: Plate_204_E02

AHC0AAA261YM05

Plate: Plate_261_M05

AHC0AAA38YM13

Plate: Plate_38_M13

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
Znf_C2H2_type Pfam Zinc finger C2H2-type
Znf_C2H2_type ProSiteProfiles Zinc finger C2H2-type
Znf_C2H2_type SMART Zinc finger C2H2-type
Znf_C2H2_sf SUPERFAMILY Zinc finger C2H2 superfamily
Znf_C2H2_type ProSitePatterns Zinc finger C2H2-type

GOSlim

20 results

GO Term Annotation Origin Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding Orthology molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
nucleic acid binding Orthology molecular function
DNA binding Orthology molecular function
nucleus Orthology cellular component
cytoplasm Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
metal ion binding Orthology molecular function
cytosol Orthology cellular component
positive regulation of cell proliferation Orthology biological process
cell differentiation Orthology biological process
multicellular organism development Orthology biological process
enzyme binding Orthology molecular function
anatomical structure morphogenesis Orthology biological process
animal organ development Orthology biological process
immune system process Orthology biological process

GO (Orthology)

22 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function
osteoblast differentiation Hs biological process
nucleic acid binding Hs molecular function
DNA binding Hs molecular function
nucleus Hs cellular component
cytoplasm Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
transcription from RNA polymerase II promoter Hs biological process
dorsal/ventral pattern formation Hs biological process
proximal/distal pattern formation Hs biological process
DEAD/H-box RNA helicase binding Hs molecular function
embryonic limb morphogenesis Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
metal ion binding Hs molecular function
hematopoietic stem cell differentiation Hs biological process
positive regulation of stem cell differentiation Hs biological process
cytosol Hs cellular component
positive regulation of cell proliferation Hs biological process

GO (Blast)

9 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 120 5.73e-31
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 162 9.60e-46
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 120 5.73e-31
nucleic acid binding Hs molecular function 162 9.60e-46
DNA binding Hs molecular function 162 9.60e-46
nucleus Hs cellular component 162 9.60e-46
cytoplasm Hs cellular component 120 5.73e-31
DEAD/H-box RNA helicase binding Hs molecular function 120 5.73e-31
metal ion binding Hs molecular function 162 9.60e-46

GO (InterProScan)

1 result

GO Term Analysis Type e-value
nucleic acid binding Pfam molecular function 4.4E-4