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GENE CARD

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Gene Card

Best human hits

CRNKL1; PABPN1L; SART3

Species

P.mammillata

Unique Gene ID

Phmamm.g00014144

Gene Model ID

Phmamm.CG.MTP2014.S1223.g14144

Location

S1223:12910..22944

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S1223.g14144.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

24 results

AHC0AAA14YK12

Plate: Plate_14_K12

AHC0AAA17YI04

Plate: Plate_17_I04

AHC0AAA23YG17

Plate: Plate_23_G17

AHC0AAA30YO17

Plate: Plate_30_O17

AHC0AAA54YM19

Plate: Plate_54_M19

AHC0AAA106YK03

Plate: Plate_106_K03

AHC0AAA115YJ17

Plate: Plate_115_J17

AHC0AAA120YP06

Plate: Plate_120_P06

AHC0AAA124YJ04

Plate: Plate_124_J04

AHC0AAA137YD01

Plate: Plate_137_D01

AHC0AAA138YJ24

Plate: Plate_138_J24

AHC0AAA143YL04

Plate: Plate_143_L04

AHC0AAA85YO08

Plate: Plate_85_O08

AHC0AAA98YN10

Plate: Plate_98_N10

AHC0AAA120YB04

Plate: Plate_120_B04

AHC0AAA166YL06

Plate: Plate_166_L06

AHC0AAA175YJ05

Plate: Plate_175_J05

AHC0AAA179YP22

Plate: Plate_179_P22

AHC0AAA183YO07

Plate: Plate_183_O07

AHC0AAA207YO07

Plate: Plate_207_O07

AHC0AAA261YC01

Plate: Plate_261_C01

AHC0AAA261YG16

Plate: Plate_261_G16

AHC0AAA54YM17

Plate: Plate_54_M17

AHC0AAA98YP12

Plate: Plate_98_P12

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term Analysis Definition
RRM_dom ProSiteProfiles RNA recognition motif domain
TPR-like_helical_dom_sf SUPERFAMILY Tetratricopeptide-like helical domain superfamily
TPR-like_helical_dom_sf Gene3D Tetratricopeptide-like helical domain superfamily
RRM_dom Pfam RNA recognition motif domain
RRM_dom SMART RNA recognition motif domain
Nucleotide-bd_a/b_plait_sf Gene3D Nucleotide-binding alpha-beta plait domain superfamily
RBD_domain_sf SUPERFAMILY RNA-binding domain superfamily
HAT SMART HAT (Half-A-TPR) repeat
SART3_RRM1 CDD SART3, RNA recognition motif 1

GOSlim

24 results

GO Term Annotation Origin Type
mRNA splicing, via spliceosome Orthology biological process
cell morphogenesis Orthology biological process
nucleic acid binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
RNA processing Orthology biological process
mRNA processing Orthology biological process
RNA splicing Orthology biological process
regulation of gene expression Orthology biological process
nuclear speck Orthology cellular component
nuclear part Orthology cellular component
macromolecular complex Orthology cellular component
organelle organization Orthology biological process
DNA binding Orthology molecular function
nuclear body Orthology cellular component
cell proliferation Orthology biological process
animal organ development Orthology biological process
immune system process Orthology biological process
cell division Orthology biological process
peptidase activity, acting on L-amino acid peptides Orthology molecular function
enzyme binding Orthology molecular function

GO (Orthology)

26 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
spliceosomal tri-snRNP complex assembly Hs biological process
spliceosomal snRNP assembly Hs biological process
mRNA splicing, via spliceosome Hs biological process
cell morphogenesis Hs biological process
nucleic acid binding Hs molecular function
RNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
U6atac snRNP Hs cellular component
cytoplasm Hs cellular component
nucleosome assembly Hs biological process
RNA processing Hs biological process
mRNA processing Hs biological process
RNA splicing Hs biological process
regulation of gene expression Hs biological process
Cajal body Hs cellular component
nuclear speck Hs cellular component
U6 snRNA binding Hs molecular function
U4 snRNA binding Hs molecular function
U6atac snRNA binding Hs molecular function
histone binding Hs molecular function
U4/U6 snRNP Hs cellular component
hematopoietic stem cell proliferation Hs biological process
positive regulation of histone deubiquitination Hs biological process
ubiquitin-specific protease binding Hs molecular function

GO (Blast)

23 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
Prp19 complex Hs cellular component 54.3 2.51e-07
nucleic acid binding Hs molecular function 493 5.30e-161
RNA binding Hs molecular function 493 5.30e-161
protein binding Hs molecular function 493 5.30e-161
nucleus Hs cellular component 493 5.30e-161
nucleoplasm Hs cellular component 493 5.30e-161
spliceosomal complex Hs cellular component 54.3 2.51e-07
U6atac snRNP Hs cellular component 493 5.30e-161
cytoplasm Hs cellular component 493 5.30e-161
Cajal body Hs cellular component 493 5.30e-161
nuclear speck Hs cellular component 493 5.30e-161
U6 snRNA binding Hs molecular function 493 5.30e-161
U4 snRNA binding Hs molecular function 493 5.30e-161
U6atac snRNA binding Hs molecular function 493 5.30e-161
histone binding Hs molecular function 493 5.30e-161
U4/U6 snRNP Hs cellular component 493 5.30e-161
U2-type catalytic step 2 spliceosome Hs cellular component 54.3 2.51e-07
prespliceosome Hs cellular component 54.3 2.51e-07
precatalytic spliceosome Hs cellular component 54.3 2.51e-07
catalytic step 1 spliceosome Hs cellular component 54.3 2.51e-07
catalytic step 2 spliceosome Hs cellular component 54.3 2.51e-07
post-mRNA release spliceosomal complex Hs cellular component 54.3 2.51e-07
ubiquitin-specific protease binding Hs molecular function 493 5.30e-161

GO (InterProScan)

3 results

GO Term Analysis Type e-value
nucleic acid binding SUPERFAMILY molecular function 2.17E-18
protein binding SUPERFAMILY molecular function 2.05E-52
RNA processing SMART biological process 0.086