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GENE CARD

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Gene Card

Best human hits

SRP72

Species

P.mammillata

Unique Gene ID

Phmamm.g00012439

Gene Model ID

Phmamm.CG.MTP2014.S862.g12439

Location

S862:24866..37797

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S862.g12439.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

43 results

AHC0AAA11YL24

Plate: Plate_11_L24

AHC0AAA15YG03

Plate: Plate_15_G03

AHC0AAA4YO08

Plate: Plate_4_O08

AHC0AAA9YP07

Plate: Plate_9_P07

AHC0AAA32YK12

Plate: Plate_32_K12

AHC0AAA34YP21

Plate: Plate_34_P21

AHC0AAA35YC21

Plate: Plate_35_C21

AHC0AAA40YJ20

Plate: Plate_40_J20

AHC0AAA46YF20

Plate: Plate_46_F20

AHC0AAA47YK05

Plate: Plate_47_K05

AHC0AAA48YL18

Plate: Plate_48_L18

AHC0AAA49YH23

Plate: Plate_49_H23

AHC0AAA50YJ21

Plate: Plate_50_J21

AHC0AAA57YF09

Plate: Plate_57_F09

AHC0AAA63YC10

Plate: Plate_63_C10

AHC0AAA72YB02

Plate: Plate_72_B02

AHC0AAA101YP02

Plate: Plate_101_P02

AHC0AAA113YO05

Plate: Plate_113_O05

AHC0AAA115YJ10

Plate: Plate_115_J10

AHC0AAA118YM22

Plate: Plate_118_M22

AHC0AAA122YF07

Plate: Plate_122_F07

AHC0AAA150YA07

Plate: Plate_150_A07

AHC0AAA151YP04

Plate: Plate_151_P04

AHC0AAA84YD03

Plate: Plate_84_D03

AHC0AAA86YL02

Plate: Plate_86_L02

AHC0AAA92YL13

Plate: Plate_92_L13

AHC0AAA94YJ06

Plate: Plate_94_J06

AHC0AAA96YC24

Plate: Plate_96_C24

AHC0AAA173YI10

Plate: Plate_173_I10

AHC0AAA184YN20

Plate: Plate_184_N20

AHC0AAA211YB11

Plate: Plate_211_B11

AHC0AAA211YE18

Plate: Plate_211_E18

AHC0AAA211YG02

Plate: Plate_211_G02

AHC0AAA212YJ21

Plate: Plate_212_J21

AHC0AAA217YO10

Plate: Plate_217_O10

AHC0AAA235YA23

Plate: Plate_235_A23

AHC0AAA248YK12

Plate: Plate_248_K12

AHC0AAA248YM10

Plate: Plate_248_M10

AHC0AAA251YP05

Plate: Plate_251_P05

AHC0AAA261YN02

Plate: Plate_261_N02

AHC0AAA262YI09

Plate: Plate_262_I09

AHC0AAA263YH19

Plate: Plate_263_H19

AHC0AAA92YN15

Plate: Plate_92_N15

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
TPR-like_helical_dom_sf Gene3D Tetratricopeptide-like helical domain superfamily
SRP_TPR-like Pfam Putative TPR-like repeat
SRP72 PANTHER Signal recognition particle, SRP72 subunit
TPR-like_helical_dom_sf SUPERFAMILY Tetratricopeptide-like helical domain superfamily
Signal_recog_part_SRP72_RNA-bd Pfam Signal recognition particle, SRP72 subunit, RNA-binding
TPR_repeat SMART Tetratricopeptide repeat
SRP72 PIRSF Signal recognition particle, SRP72 subunit

GOSlim

11 results

GO Term Annotation Origin Type
RNA binding Orthology molecular function
protein binding Orthology molecular function
intracellular Orthology cellular component
cytoplasm Orthology cellular component
endoplasmic reticulum Orthology cellular component
cytosol Orthology cellular component
SRP-dependent cotranslational protein targeting to membrane Orthology biological process
macromolecular complex binding Orthology molecular function
cytoplasmic part Orthology cellular component
macromolecular complex Orthology cellular component
transmembrane transport Orthology biological process

GO (Orthology)

16 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
RNA binding Hs molecular function
signal recognition particle binding Hs molecular function
protein binding Hs molecular function
intracellular Hs cellular component
cytoplasm Hs cellular component
endoplasmic reticulum Hs cellular component
signal recognition particle, endoplasmic reticulum targeting Hs cellular component
cytosol Hs cellular component
SRP-dependent cotranslational protein targeting to membrane Hs biological process
SRP-dependent cotranslational protein targeting to membrane, translocation Hs biological process
7S RNA binding Hs molecular function
intracellular ribonucleoprotein complex Hs cellular component
TPR domain binding Hs molecular function
response to drug Hs biological process
ribosome binding Hs molecular function
signal recognition particle Hs cellular component

GO (Blast)

13 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
RNA binding Hs molecular function 437 7.00e-144
signal recognition particle binding Hs molecular function 437 7.00e-144
protein binding Hs molecular function 437 7.00e-144
intracellular Hs cellular component 437 7.00e-144
cytoplasm Hs cellular component 437 7.00e-144
endoplasmic reticulum Hs cellular component 437 7.00e-144
signal recognition particle, endoplasmic reticulum targeting Hs cellular component 437 7.00e-144
cytosol Hs cellular component 437 7.00e-144
7S RNA binding Hs molecular function 437 7.00e-144
intracellular ribonucleoprotein complex Hs cellular component 437 7.00e-144
TPR domain binding Hs molecular function 437 7.00e-144
ribosome binding Hs molecular function 437 7.00e-144
signal recognition particle Hs cellular component 437 7.00e-144

GO (InterProScan)

4 results

GO Term Analysis Type e-value
protein binding Gene3D molecular function 1.0E-47
SRP-dependent cotranslational protein targeting to membrane PANTHER biological process 2.1E-182
7S RNA binding Pfam molecular function 1.2E-14
signal recognition particle Pfam cellular component 1.2E-14