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GENE CARD

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  1. Gene 'Phmamm.CG.MTP2014.S4...'

Gene Card

Best human hits

PARN; PNLDC1

Species

P.mammillata

Unique Gene ID

Phmamm.g00009042

Gene Model ID

Phmamm.CG.MTP2014.S465.g09042

Location

S465:42628..47129

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S465.g09042.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

28 results

AHC0AAA17YB17

Plate: Plate_17_B17

AHC0AAA21YE11

Plate: Plate_21_E11

AHC0AAA34YO12

Plate: Plate_34_O12

AHC0AAA44YC09

Plate: Plate_44_C09

AHC0AAA46YE02

Plate: Plate_46_E02

AHC0AAA59YJ20

Plate: Plate_59_J20

AHC0AAA73YD14

Plate: Plate_73_D14

AHC0AAA109YP16

Plate: Plate_109_P16

AHC0AAA117YB09

Plate: Plate_117_B09

AHC0AAA120YL04

Plate: Plate_120_L04

AHC0AAA128YN05

Plate: Plate_128_N05

AHC0AAA140YD24

Plate: Plate_140_D24

AHC0AAA147YD14

Plate: Plate_147_D14

AHC0AAA150YA23

Plate: Plate_150_A23

AHC0AAA92YI10

Plate: Plate_92_I10

AHC0AAA120YL02

Plate: Plate_120_L02

AHC0AAA147YF16

Plate: Plate_147_F16

AHC0AAA186YN08

Plate: Plate_186_N08

AHC0AAA188YH17

Plate: Plate_188_H17

AHC0AAA201YB23

Plate: Plate_201_B23

AHC0AAA214YA15

Plate: Plate_214_A15

AHC0AAA229YC15

Plate: Plate_229_C15

AHC0AAA231YA11

Plate: Plate_231_A11

AHC0AAA249YJ04

Plate: Plate_249_J04

AHC0AAA254YB22

Plate: Plate_254_B22

AHC0AAA259YP07

Plate: Plate_259_P07

AHC0AAA269YK22

Plate: Plate_269_K22

AHC0AAA92YK12

Plate: Plate_92_K12

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
R3H_dom_sf SUPERFAMILY R3H domain superfamily
RNaseH-like_sf SUPERFAMILY Ribonuclease H-like superfamily
RNaseH_sf Gene3D Ribonuclease H superfamily
RNase_CAF1 Pfam Ribonuclease CAF1

GOSlim

23 results

GO Term Annotation Origin Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Orthology biological process
nucleic acid binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleolus Orthology cellular component
cytoplasm Orthology cellular component
endoplasmic reticulum Blast cellular component
endoplasmic reticulum membrane Blast cellular component
cytosol Orthology cellular component
mRNA catabolic process Orthology biological process
membrane Blast cellular component
integral component of membrane Blast cellular component
hydrolase activity Orthology molecular function
protein kinase binding Orthology molecular function
cation binding Orthology molecular function
metal ion binding Orthology molecular function
nuclear-transcribed mRNA catabolic process Orthology biological process
RNA metabolic process Orthology biological process
gamete generation Orthology biological process
organelle organization Orthology biological process
DNA metabolic process Orthology biological process
transferase activity, transferring phosphorus-containing groups Orthology molecular function

GO (Orthology)

24 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Hs biological process
nuclear-transcribed mRNA poly(A) tail shortening Hs biological process
nucleic acid binding Hs molecular function
RNA binding Hs molecular function
mRNA 3'-UTR binding Hs molecular function
nuclease activity Hs molecular function
exonuclease activity Hs molecular function
poly(A)-specific ribonuclease activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleolus Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
mRNA catabolic process Hs biological process
female gamete generation Hs biological process
RNA modification Hs biological process
hydrolase activity Hs molecular function
protein kinase binding Hs molecular function
positive regulation of telomere maintenance via telomerase Hs biological process
cation binding Hs molecular function
regulation of mRNA stability Hs biological process
metal ion binding Hs molecular function
telomerase RNA binding Hs molecular function
RNA phosphodiester bond hydrolysis, exonucleolytic Hs biological process

GO (Blast)

20 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleic acid binding Hs molecular function 280 8.67e-87
RNA binding Hs molecular function 280 8.67e-87
mRNA 3'-UTR binding Hs molecular function 280 8.67e-87
nuclease activity Hs molecular function 280 8.67e-87
exonuclease activity Hs molecular function 280 8.67e-87
poly(A)-specific ribonuclease activity Hs molecular function 280 8.67e-87
protein binding Hs molecular function 280 8.67e-87
nucleus Hs cellular component 280 8.67e-87
nucleolus Hs cellular component 280 8.67e-87
cytoplasm Hs cellular component 280 8.67e-87
endoplasmic reticulum Hs cellular component 119 1.52e-28
endoplasmic reticulum membrane Hs cellular component 119 1.52e-28
cytosol Hs cellular component 280 8.67e-87
membrane Hs cellular component 119 1.52e-28
integral component of membrane Hs cellular component 119 1.52e-28
hydrolase activity Hs molecular function 280 8.67e-87
protein kinase binding Hs molecular function 280 8.67e-87
cation binding Hs molecular function 280 8.67e-87
metal ion binding Hs molecular function 280 8.67e-87
telomerase RNA binding Hs molecular function 280 8.67e-87

GO (InterProScan)

1 result

GO Term Analysis Type e-value
nucleic acid binding Gene3D molecular function 1.9E-52