Login
Help

GENE CARD

Submit your Data

Gene Card

Best human hits

FOXD4; FOXF1; FOXF2

Species

P.mammillata

Unique Gene ID

Phmamm.g00007919

Gene Model ID

Phmamm.CG.MTP2014.S371.g07919

Location

S371:25207..27423

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S371.g07919.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

7 results

AHC0AAA39YO07

Plate: Plate_39_O07

AHC0AAA44YF17

Plate: Plate_44_F17

AHC0AAA64YA02

Plate: Plate_64_A02

AHC0AAA122YG03

Plate: Plate_122_G03

AHC0AAA92YD20

Plate: Plate_92_D20

AHC0AAA39YO05

Plate: Plate_39_O05

AHC0AAA92YD18

Plate: Plate_92_D18

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree

 Click here to see the tree inference method

Gene Annotations

InterPro

8 results

IPR Term Analysis Definition
TF_fork_head_CS_2 ProSitePatterns Fork head domain conserved site 2
Fork_head_dom Pfam Fork head domain
WH-like_DNA-bd_sf Gene3D Winged helix-like DNA-binding domain superfamily
Fork_head_dom PRINTS Fork head domain
Fork_head_dom ProSiteProfiles Fork head domain
Fork_head_dom SMART Fork head domain
Fork_head_dom CDD Fork head domain
WH_DNA-bd_sf SUPERFAMILY Winged helix DNA-binding domain superfamily

GOSlim

12 results

GO Term Annotation Origin Type
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Blast molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Blast molecular function
DNA binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
nucleus Blast cellular component
regulation of transcription, DNA-templated InterProScan biological process
transcription factor binding Blast molecular function
sequence-specific DNA binding Blast molecular function
transcription regulatory region DNA binding Blast molecular function
intracellular part Blast cellular component
macromolecular complex Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

12 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 191 2.09e-56
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 191 2.09e-56
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 191 2.09e-56
DNA binding Hs molecular function 191 2.09e-56
transcription factor activity, sequence-specific DNA binding Hs molecular function 191 2.09e-56
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function 191 2.09e-56
nucleus Hs cellular component 191 2.09e-56
transcription factor complex Hs cellular component 191 2.09e-56
transcription factor binding Hs molecular function 187 5.48e-54
DNA binding, bending Hs molecular function 129 1.19e-32
sequence-specific DNA binding Hs molecular function 191 2.09e-56
transcription regulatory region DNA binding Hs molecular function 191 2.09e-56

GO (InterProScan)

3 results

GO Term Analysis Type e-value
transcription factor activity, sequence-specific DNA binding SMART molecular function 7.3E-48
regulation of transcription, DNA-templated SMART biological process 7.3E-48
sequence-specific DNA binding SMART molecular function 7.3E-48