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Gene Card

Best human hits

BCKDHB; PDHB; TKT

Species

P.mammillata

Unique Gene ID

Phmamm.g00007187

Gene Model ID

Phmamm.CG.MTP2014.S319.g07187

Location

S319:90309..93889

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S319.g07187.01.t
Phmamm.CG.MTP2014.S319.g07187.02.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

6 results

AHC0AAA14YP11

Plate: Plate_14_P11

AHC0AAA17YL19

Plate: Plate_17_L19

AHC0AAA32YH20

Plate: Plate_32_H20

AHC0AAA89YK20

Plate: Plate_89_K20

AHC0AAA217YI20

Plate: Plate_217_I20

AHC0AAA267YE13

Plate: Plate_267_E13

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
Transketolase-like_Pyr-bd SMART Transketolase-like, pyrimidine-binding domain
Transketolase-like_Pyr-bd Pfam Transketolase-like, pyrimidine-binding domain
THDP-binding SUPERFAMILY Thiamin diphosphate-binding fold
Transketo_C/PFOR_II SUPERFAMILY Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II
Transketolase_C Pfam Transketolase, C-terminal domain
Transketo_C/PFOR_II Gene3D Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II

GOSlim

23 results

GO Term Annotation Origin Type
catalytic activity Orthology molecular function
protein binding Orthology molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
mitochondrion Orthology cellular component
mitochondrial matrix Orthology cellular component
peroxisome Blast cellular component
cytosol Blast cellular component
metabolic process Orthology biological process
nuclear body Blast cellular component
nuclear speck Blast cellular component
transferase activity Blast molecular function
vesicle Blast cellular component
protein homodimerization activity Blast molecular function
myelin sheath Blast cellular component
metal ion binding Blast molecular function
cofactor binding Blast molecular function
oxidation-reduction process Orthology biological process
extracellular exosome Blast cellular component
macromolecular complex Orthology cellular component
phosphate-containing compound metabolic process Blast biological process
amide biosynthetic process Blast biological process
cytoplasmic part Blast cellular component

GO (Orthology)

12 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
catalytic activity Hs molecular function
alpha-ketoacid dehydrogenase activity Hs molecular function
3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity Hs molecular function
protein binding Hs molecular function
mitochondrion Hs cellular component
mitochondrial matrix Hs cellular component
mitochondrial alpha-ketoglutarate dehydrogenase complex Hs cellular component
metabolic process Hs biological process
branched-chain amino acid catabolic process Hs biological process
oxidoreductase activity Hs molecular function
carboxy-lyase activity Hs molecular function
oxidation-reduction process Hs biological process

GO (Blast)

27 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
catalytic activity Hs molecular function 527 0.0
alpha-ketoacid dehydrogenase activity Hs molecular function 527 0.0
3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity Hs molecular function 527 0.0
pyruvate dehydrogenase activity Hs molecular function 185 4.00e-56
pyruvate dehydrogenase (acetyl-transferring) activity Hs molecular function 185 4.00e-56
transketolase activity Hs molecular function 55.8 1.42e-08
protein binding Hs molecular function 527 0.0
nucleus Hs cellular component 185 4.00e-56
nucleoplasm Hs cellular component 185 4.00e-56
mitochondrion Hs cellular component 527 0.0
mitochondrial matrix Hs cellular component 527 0.0
peroxisome Hs cellular component 55.8 1.42e-08
cytosol Hs cellular component 55.8 1.42e-08
mitochondrial alpha-ketoglutarate dehydrogenase complex Hs cellular component 527 0.0
oxidoreductase activity Hs molecular function 527 0.0
nuclear body Hs cellular component 55.8 1.42e-08
nuclear speck Hs cellular component 55.8 1.42e-08
transferase activity Hs molecular function 55.8 1.42e-08
carboxy-lyase activity Hs molecular function 527 0.0
vesicle Hs cellular component 55.8 1.42e-08
pyruvate dehydrogenase (NAD+) activity Hs molecular function 185 4.00e-56
protein homodimerization activity Hs molecular function 55.8 1.42e-08
myelin sheath Hs cellular component 55.8 1.42e-08
pyruvate dehydrogenase complex Hs cellular component 185 4.00e-56
metal ion binding Hs molecular function 55.8 1.42e-08
cofactor binding Hs molecular function 55.8 1.42e-08
extracellular exosome Hs cellular component 185 4.00e-56

GO (InterProScan)

2 results

GO Term Analysis Type e-value
catalytic activity Gene3D molecular function 1.8E-52
metabolic process Gene3D biological process 1.8E-52

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