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GENE CARD

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Gene Card

Best human hits

CENPJ; DHX36; YTHDC2

Species

P.mammillata

Unique Gene ID

Phmamm.g00005780

Gene Model ID

Phmamm.CG.MTP2014.S231.g05780

Location

S231:77147..83131

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S231.g05780.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

23 results

AHC0AAA22YN18

Plate: Plate_22_N18

AHC0AAA5YG02

Plate: Plate_5_G02

AHC0AAA32YF03

Plate: Plate_32_F03

AHC0AAA33YK17

Plate: Plate_33_K17

AHC0AAA53YJ23

Plate: Plate_53_J23

AHC0AAA54YJ21

Plate: Plate_54_J21

AHC0AAA57YA22

Plate: Plate_57_A22

AHC0AAA68YF15

Plate: Plate_68_F15

AHC0AAA72YD19

Plate: Plate_72_D19

AHC0AAA79YE13

Plate: Plate_79_E13

AHC0AAA130YJ02

Plate: Plate_130_J02

AHC0AAA135YN24

Plate: Plate_135_N24

AHC0AAA144YD11

Plate: Plate_144_D11

AHC0AAA150YP11

Plate: Plate_150_P11

AHC0AAA83YM04

Plate: Plate_83_M04

AHC0AAA164YH02

Plate: Plate_164_H02

AHC0AAA181YJ17

Plate: Plate_181_J17

AHC0AAA204YO18

Plate: Plate_204_O18

AHC0AAA205YK02

Plate: Plate_205_K02

AHC0AAA250YK12

Plate: Plate_250_K12

AHC0AAA251YF16

Plate: Plate_251_F16

AHC0AAA264YN10

Plate: Plate_264_N10

AHC0AAA54YL23

Plate: Plate_54_L23

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term Analysis Definition
Tcp10_C_dom Pfam T-complex protein 10, C-terminal domain
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
R3H_dom_sf SUPERFAMILY R3H domain superfamily
R3H_dom ProSiteProfiles R3H domain
R3H_dom SMART R3H domain
R3H_dom_sf Gene3D R3H domain superfamily
TCP10_fam PANTHER T-complex protein 10 family
R3H_dom Pfam R3H domain

GOSlim

36 results

GO Term Annotation Origin Type
nucleotide binding Blast molecular function
nucleic acid binding Blast molecular function
DNA binding Blast molecular function
RNA binding Blast molecular function
protein binding Orthology molecular function
ATP binding Blast molecular function
nucleus Orthology cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
endoplasmic reticulum Blast cellular component
centrosome Blast cellular component
microtubule organizing center Blast cellular component
cytosol Orthology cellular component
cytoskeleton Blast cellular component
microtubule Blast cellular component
plasma membrane Blast cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
tubulin binding Blast molecular function
membrane Blast cellular component
integral component of membrane Blast cellular component
hydrolase activity Blast molecular function
protein kinase binding Blast molecular function
identical protein binding Orthology molecular function
transcription regulatory region DNA binding Blast molecular function
extracellular exosome Blast cellular component
negative regulation of transcription from RNA polymerase II promoter Orthology biological process
transcription factor binding Orthology molecular function
intracellular organelle part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
nucleoside-triphosphatase activity Blast molecular function
cytoplasmic part Blast cellular component
macromolecular complex Blast cellular component
cell projection part Blast cellular component
plasma membrane region Blast cellular component
enzyme binding Blast molecular function

GO (Orthology)

10 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
protein binding Hs molecular function
nucleus Hs cellular component
cytosol Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
identical protein binding Hs molecular function
negative regulation of transcription from RNA polymerase II promoter Hs biological process
RNA polymerase II transcription corepressor activity Hs molecular function
protein self-association Hs molecular function
repressing transcription factor binding Hs molecular function

GO (Blast)

43 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleotide binding Hs molecular function 244 4.01e-66
chromosome, telomeric region Hs cellular component 115 5.94e-26
core promoter binding Hs molecular function 115 5.94e-26
G-quadruplex RNA binding Hs molecular function 115 5.94e-26
nucleic acid binding Hs molecular function 244 4.01e-66
DNA binding Hs molecular function 115 5.94e-26
single-stranded DNA binding Hs molecular function 115 5.94e-26
RNA binding Hs molecular function 244 4.01e-66
double-stranded RNA binding Hs molecular function 115 5.94e-26
ATP-dependent RNA helicase activity Hs molecular function 244 4.01e-66
helicase activity Hs molecular function 244 4.01e-66
protein binding Hs molecular function 244 4.01e-66
ATP binding Hs molecular function 244 4.01e-66
nucleus Hs cellular component 115 5.94e-26
nucleoplasm Hs cellular component 239 7.50e-65
chromosome Hs cellular component 115 5.94e-26
cytoplasm Hs cellular component 244 4.01e-66
endoplasmic reticulum Hs cellular component 244 4.01e-66
centrosome Hs cellular component 239 7.50e-65
centriole Hs cellular component 239 7.50e-65
microtubule organizing center Hs cellular component 239 7.50e-65
cytosol Hs cellular component 239 7.50e-65
cytoskeleton Hs cellular component 239 7.50e-65
microtubule Hs cellular component 239 7.50e-65
plasma membrane Hs cellular component 239 7.50e-65
DNA-dependent ATPase activity Hs molecular function 115 5.94e-26
RNA-dependent ATPase activity Hs molecular function 244 4.01e-66
gamma-tubulin small complex Hs cellular component 239 7.50e-65
tubulin binding Hs molecular function 239 7.50e-65
membrane Hs cellular component 115 5.94e-26
integral component of membrane Hs cellular component 115 5.94e-26
hydrolase activity Hs molecular function 244 4.01e-66
protein kinase binding Hs molecular function 239 7.50e-65
protein domain specific binding Hs molecular function 239 7.50e-65
ciliary basal body Hs cellular component 239 7.50e-65
identical protein binding Hs molecular function 239 7.50e-65
histone deacetylase binding Hs molecular function 115 5.94e-26
transcription regulatory region DNA binding Hs molecular function 115 5.94e-26
G-quadruplex DNA binding Hs molecular function 115 5.94e-26
telomerase RNA binding Hs molecular function 115 5.94e-26
extracellular exosome Hs cellular component 115 5.94e-26
RNA polymerase binding Hs molecular function 244 4.01e-66
N6-methyladenosine-containing RNA binding Hs molecular function 244 4.01e-66

GO (InterProScan)

1 result

GO Term Analysis Type e-value
nucleic acid binding Gene3D molecular function 9.0E-13