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GENE CARD

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Gene Card

Best human hits

HMCN1; HMCN2; HSPG2

Species

P.mammillata

Unique Gene ID

Phmamm.g00005761

Gene Model ID

Phmamm.CG.MTP2014.S230.g05761

Location

S230:112263..146967

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S230.g05761.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

6 results

AHC0AAA70YN12

Plate: Plate_70_N12

AHC0AAA127YI10

Plate: Plate_127_I10

AHC0AAA161YM02

Plate: Plate_161_M02

AHC0AAA166YB10

Plate: Plate_166_B10

AHC0AAA215YL21

Plate: Plate_215_L21

AHC0AAA225YH02

Plate: Plate_225_H02

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

28 results

IPR Term Analysis Definition
LDrepeatLR_classA_rpt SMART Low-density lipoprotein (LDL) receptor class A repeat
Ig-like_dom ProSiteProfiles Immunoglobulin-like domain
Ig-like_fold Gene3D Immunoglobulin-like fold
Laminin_EGF ProSitePatterns Laminin EGF domain
EGF-like_dom ProSiteProfiles EGF-like domain
LDrepeatLR_classA_rpt ProSiteProfiles Low-density lipoprotein (LDL) receptor class A repeat
LDrepeatLR_classA_rpt PRINTS Low-density lipoprotein (LDL) receptor class A repeat
Ig-like_dom_sf SUPERFAMILY Immunoglobulin-like domain superfamily
Laminin_EGF ProSiteProfiles Laminin EGF domain
Laminin_G ProSiteProfiles Laminin G domain
LDrepeatLR_classA_rpt CDD Low-density lipoprotein (LDL) receptor class A repeat
Laminin_IV ProSiteProfiles Laminin IV
Laminin_G SMART Laminin G domain
LDLR_class-A_CS ProSitePatterns Low-density lipoprotein (LDL) receptor class A, conserved site
Laminin_IV Pfam Laminin IV
Laminin_IV SMART Laminin IV
LDL_receptor-like_sf SUPERFAMILY LDL receptor-like superfamily
ConA-like_dom_sf SUPERFAMILY Concanavalin A-like lectin/glucanase domain superfamily
Ig_sub SMART Immunoglobulin subtype
Laminin_EGF SMART Laminin EGF domain
Ig_I-set Pfam Immunoglobulin I-set
EGF-like_CS ProSitePatterns EGF-like, conserved site
LDrepeatLR_classA_rpt Pfam Low-density lipoprotein (LDL) receptor class A repeat
EGF-like_dom SMART EGF-like domain
Laminin_EGF Pfam Laminin EGF domain
Ig_sub2 SMART Immunoglobulin subtype 2
Ig-like_dom Pfam Immunoglobulin-like domain
Laminin_G Pfam Laminin G domain

GOSlim

34 results

GO Term Annotation Origin Type
angiogenesis Orthology biological process
calcium ion binding Orthology molecular function
protein binding Orthology molecular function
extracellular region Orthology cellular component
extracellular space Orthology cellular component
cytoplasm Blast cellular component
plasma membrane Orthology cellular component
focal adhesion Orthology cellular component
brain development Orthology biological process
protein C-terminus binding Orthology molecular function
membrane Blast cellular component
cell junction Blast cellular component
cell differentiation Orthology biological process
extracellular matrix organization Orthology biological process
metal ion binding Orthology molecular function
extracellular exosome Orthology cellular component
cardiovascular system development Orthology biological process
cellular metabolic process Orthology biological process
organic substance metabolic process Orthology biological process
extracellular region part Orthology cellular component
Golgi apparatus part Orthology cellular component
intracellular organelle lumen Orthology cellular component
membrane organization Orthology biological process
organelle organization Orthology biological process
defense response Orthology biological process
cellular process Orthology biological process
lysosome Orthology cellular component
vacuolar part Orthology cellular component
receptor binding Orthology molecular function
plasma membrane part Orthology cellular component
macromolecular complex Orthology cellular component
cell periphery Blast cellular component
cytoplasmic part Blast cellular component
plasma membrane region Blast cellular component

GO (Orthology)

30 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
retinoid metabolic process Hs biological process
angiogenesis Hs biological process
calcium ion binding Hs molecular function
protein binding Hs molecular function
extracellular region Hs cellular component
proteinaceous extracellular matrix Hs cellular component
basement membrane Hs cellular component
extracellular space Hs cellular component
Golgi lumen Hs cellular component
plasma membrane Hs cellular component
focal adhesion Hs cellular component
glycosaminoglycan biosynthetic process Hs biological process
glycosaminoglycan catabolic process Hs biological process
lipid metabolic process Hs biological process
receptor-mediated endocytosis Hs biological process
inflammatory response Hs biological process
brain development Hs biological process
protein C-terminus binding Hs molecular function
cell growth Hs biological process
negative regulation of angiogenesis Hs biological process
cell differentiation Hs biological process
extracellular matrix organization Hs biological process
glycosaminoglycan metabolic process Hs biological process
extracellular matrix Hs cellular component
lysosomal lumen Hs cellular component
metal ion binding Hs molecular function
low-density lipoprotein particle receptor binding Hs molecular function
extracellular exosome Hs cellular component
cardiovascular system development Hs biological process
plasma membrane protein complex Hs cellular component

GO (Blast)

21 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
calcium ion binding Hs molecular function 1273 0.0
protein binding Hs molecular function 1273 0.0
extracellular region Hs cellular component 1273 0.0
proteinaceous extracellular matrix Hs cellular component 1273 0.0
basement membrane Hs cellular component 1273 0.0
extracellular space Hs cellular component 1273 0.0
cytoplasm Hs cellular component 313 9.25e-85
Golgi lumen Hs cellular component 1273 0.0
plasma membrane Hs cellular component 1273 0.0
focal adhesion Hs cellular component 1273 0.0
cell cortex Hs cellular component 313 9.25e-85
protein C-terminus binding Hs molecular function 1273 0.0
membrane Hs cellular component 306 1.05e-82
cell junction Hs cellular component 313 9.25e-85
extracellular matrix Hs cellular component 1273 0.0
cleavage furrow Hs cellular component 313 9.25e-85
lysosomal lumen Hs cellular component 1273 0.0
metal ion binding Hs molecular function 1273 0.0
low-density lipoprotein particle receptor binding Hs molecular function 1273 0.0
extracellular exosome Hs cellular component 1273 0.0
plasma membrane protein complex Hs cellular component 1273 0.0

GO (InterProScan)

1 result

GO Term Analysis Type e-value
protein binding PRINTS molecular function 7.1E-18