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Gene Card

Best human hits

TSEN2

Species

P.mammillata

Unique Gene ID

Phmamm.g00005225

Gene Model ID

Phmamm.CG.MTP2014.S200.g05225

Location

S200:37985..41723

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S200.g05225.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

8 results

AHC0AAA5YC20

Plate: Plate_5_C20

AHC0AAA49YB09

Plate: Plate_49_B09

AHC0AAA98YO22

Plate: Plate_98_O22

AHC0AAA99YH22

Plate: Plate_99_H22

AHC0AAA165YO24

Plate: Plate_165_O24

AHC0AAA189YO16

Plate: Plate_189_O16

AHC0AAA241YJ19

Plate: Plate_241_J19

AHC0AAA98YA20

Plate: Plate_98_A20

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

1 result

IPR Term Analysis Definition
tRNA_splic PANTHER tRNA-splicing endonuclease

GOSlim

15 results

GO Term Annotation Origin Type
nucleic acid binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
nucleolus Orthology cellular component
centrosome Orthology cellular component
cytosol Orthology cellular component
mRNA processing Orthology biological process
RNA metabolic process Orthology biological process
hydrolase activity Orthology molecular function
nuclear part Orthology cellular component
macromolecular complex Orthology cellular component
RNA splicing Orthology biological process
RNA processing Orthology biological process
catalytic activity Orthology molecular function

GO (Orthology)

19 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
tRNA-intron endonuclease activity Hs molecular function
tRNA-intron endonuclease complex Hs cellular component
tRNA-type intron splice site recognition and cleavage Hs biological process
nucleic acid binding Hs molecular function
nuclease activity Hs molecular function
endonuclease activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
nucleolus Hs cellular component
centrosome Hs cellular component
cytosol Hs cellular component
tRNA splicing, via endonucleolytic cleavage and ligation Hs biological process
mRNA processing Hs biological process
tRNA processing Hs biological process
lyase activity Hs molecular function
nucleic acid phosphodiester bond hydrolysis Hs biological process
RNA phosphodiester bond hydrolysis Hs biological process
RNA phosphodiester bond hydrolysis, endonucleolytic Hs biological process

GO (Blast)

12 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
tRNA-intron endonuclease activity Hs molecular function 74.3 1.69e-16
tRNA-intron endonuclease complex Hs cellular component 74.3 1.69e-16
nucleic acid binding Hs molecular function 74.3 1.69e-16
nuclease activity Hs molecular function 74.3 1.69e-16
endonuclease activity Hs molecular function 74.3 1.69e-16
protein binding Hs molecular function 74.3 1.69e-16
nucleus Hs cellular component 74.3 1.69e-16
nucleoplasm Hs cellular component 74.3 1.69e-16
nucleolus Hs cellular component 74.3 1.69e-16
centrosome Hs cellular component 74.3 1.69e-16
cytosol Hs cellular component 74.3 1.69e-16
lyase activity Hs molecular function 74.3 1.69e-16

GO (InterProScan)

2 results

GO Term Analysis Type e-value
tRNA-intron endonuclease activity PANTHER molecular function 1.1E-17
tRNA splicing, via endonucleolytic cleavage and ligation PANTHER biological process 1.1E-17

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