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GENE CARD

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Gene Card

Best human hits

YBX1; YBX2; YBX3

Species

P.mammillata

Unique Gene ID

Phmamm.g00005041

Gene Model ID

Phmamm.CG.MTP2014.S189.g05041

Location

S189:183476..191637

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S189.g05041.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

103 results

AHC0AAA10YN04

Plate: Plate_10_N04

AHC0AAA13YH08

Plate: Plate_13_H08

AHC0AAA19YC02

Plate: Plate_19_C02

AHC0AAA19YO16

Plate: Plate_19_O16

AHC0AAA19YP20

Plate: Plate_19_P20

AHC0AAA3YI19

Plate: Plate_3_I19

AHC0AAA9YA13

Plate: Plate_9_A13

AHC0AAA9YM04

Plate: Plate_9_M04

AHC0AAA28YK06

Plate: Plate_28_K06

AHC0AAA34YE11

Plate: Plate_34_E11

AHC0AAA35YE16

Plate: Plate_35_E16

AHC0AAA36YK04

Plate: Plate_36_K04

AHC0AAA38YF09

Plate: Plate_38_F09

AHC0AAA44YC06

Plate: Plate_44_C06

AHC0AAA46YP19

Plate: Plate_46_P19

AHC0AAA47YD08

Plate: Plate_47_D08

AHC0AAA48YG22

Plate: Plate_48_G22

AHC0AAA49YO18

Plate: Plate_49_O18

AHC0AAA51YN16

Plate: Plate_51_N16

AHC0AAA53YP19

Plate: Plate_53_P19

AHC0AAA59YN03

Plate: Plate_59_N03

AHC0AAA61YL11

Plate: Plate_61_L11

AHC0AAA64YD13

Plate: Plate_64_D13

AHC0AAA65YN19

Plate: Plate_65_N19

AHC0AAA66YN22

Plate: Plate_66_N22

AHC0AAA68YF17

Plate: Plate_68_F17

AHC0AAA70YB21

Plate: Plate_70_B21

AHC0AAA71YM07

Plate: Plate_71_M07

AHC0AAA75YI08

Plate: Plate_75_I08

AHC0AAA77YM18

Plate: Plate_77_M18

AHC0AAA77YP05

Plate: Plate_77_P05

AHC0AAA79YK24

Plate: Plate_79_K24

AHC0AAA103YP21

Plate: Plate_103_P21

AHC0AAA105YJ19

Plate: Plate_105_J19

AHC0AAA106YM18

Plate: Plate_106_M18

AHC0AAA108YG13

Plate: Plate_108_G13

AHC0AAA109YH19

Plate: Plate_109_H19

AHC0AAA110YB21

Plate: Plate_110_B21

AHC0AAA116YP13

Plate: Plate_116_P13

AHC0AAA117YP17

Plate: Plate_117_P17

AHC0AAA119YK04

Plate: Plate_119_K04

AHC0AAA123YA06

Plate: Plate_123_A06

AHC0AAA123YK02

Plate: Plate_123_K02

AHC0AAA127YE02

Plate: Plate_127_E02

AHC0AAA130YJ11

Plate: Plate_130_J11

AHC0AAA133YN03

Plate: Plate_133_N03

AHC0AAA142YH13

Plate: Plate_142_H13

AHC0AAA144YG14

Plate: Plate_144_G14

AHC0AAA145YL17

Plate: Plate_145_L17

AHC0AAA83YD20

Plate: Plate_83_D20

AHC0AAA86YI19

Plate: Plate_86_I19

AHC0AAA88YG09

Plate: Plate_88_G09

AHC0AAA88YJ02

Plate: Plate_88_J02

AHC0AAA90YI24

Plate: Plate_90_I24

AHC0AAA92YI13

Plate: Plate_92_I13

AHC0AAA93YJ23

Plate: Plate_93_J23

AHC0AAA94YH04

Plate: Plate_94_H04

AHC0AAA97YK22

Plate: Plate_97_K22

AHC0AAA99YF05

Plate: Plate_99_F05

AHC0AAA106YO20

Plate: Plate_106_O20

AHC0AAA133YN01

Plate: Plate_133_N01

AHC0AAA161YN19

Plate: Plate_161_N19

AHC0AAA163YA07

Plate: Plate_163_A07

AHC0AAA169YE08

Plate: Plate_169_E08

AHC0AAA170YC14

Plate: Plate_170_C14

AHC0AAA171YM02

Plate: Plate_171_M02

AHC0AAA175YL08

Plate: Plate_175_L08

AHC0AAA177YO10

Plate: Plate_177_O10

AHC0AAA183YD04

Plate: Plate_183_D04

AHC0AAA194YL09

Plate: Plate_194_L09

AHC0AAA198YI07

Plate: Plate_198_I07

AHC0AAA198YN06

Plate: Plate_198_N06

AHC0AAA201YH02

Plate: Plate_201_H02

AHC0AAA206YM02

Plate: Plate_206_M02

AHC0AAA209YI13

Plate: Plate_209_I13

AHC0AAA215YE04

Plate: Plate_215_E04

AHC0AAA215YI07

Plate: Plate_215_I07

AHC0AAA217YF17

Plate: Plate_217_F17

AHC0AAA221YE18

Plate: Plate_221_E18

AHC0AAA221YJ04

Plate: Plate_221_J04

AHC0AAA222YB11

Plate: Plate_222_B11

AHC0AAA223YG07

Plate: Plate_223_G07

AHC0AAA226YE02

Plate: Plate_226_E02

AHC0AAA228YB21

Plate: Plate_228_B21

AHC0AAA230YD22

Plate: Plate_230_D22

AHC0AAA231YB21

Plate: Plate_231_B21

AHC0AAA231YC21

Plate: Plate_231_C21

AHC0AAA235YN01

Plate: Plate_235_N01

AHC0AAA222YN24

Plate: Plate_222_N24

AHC0AAA242YM20

Plate: Plate_242_M20

AHC0AAA240YI12

Plate: Plate_240_I12

AHC0AAA243YC07

Plate: Plate_243_C07

AHC0AAA250YO11

Plate: Plate_250_O11

AHC0AAA259YN08

Plate: Plate_259_N08

AHC0AAA257YF15

Plate: Plate_257_F15

AHC0AAA262YJ12

Plate: Plate_262_J12

AHC0AAA262YL21

Plate: Plate_262_L21

AHC0AAA261YJ17

Plate: Plate_261_J17

AHC0AAA265YJ20

Plate: Plate_265_J20

AHC0AAA263YE18

Plate: Plate_263_E18

AHC0AAA38YH11

Plate: Plate_38_H11

AHC0AAA266YM24

Plate: Plate_266_M24

AHC0AAA92YK15

Plate: Plate_92_K15

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
CSP_DNA-bd CDD Cold-shock protein, DNA-binding
CSP_DNA-bd Pfam Cold-shock protein, DNA-binding
CSD SMART Cold shock domain
NA-bd_OB-fold SUPERFAMILY Nucleic acid-binding, OB-fold
CSP_DNA-bd PRINTS Cold-shock protein, DNA-binding

GOSlim

29 results

GO Term Annotation Origin Type
negative regulation of transcription from RNA polymerase II promoter Blast biological process
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Blast molecular function
nucleic acid binding Blast molecular function
DNA binding Blast molecular function
chromatin binding Blast molecular function
double-stranded DNA binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
transcription corepressor activity Blast molecular function
RNA binding Blast molecular function
protein binding Blast molecular function
extracellular region Blast cellular component
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
cytosol Blast cellular component
regulation of transcription, DNA-templated InterProScan biological process
nuclear membrane Blast cellular component
intracellular membrane-bounded organelle Blast cellular component
perinuclear region of cytoplasm Blast cellular component
extracellular exosome Blast cellular component
nucleolus Blast cellular component
nuclear part Blast cellular component
macromolecular complex Blast cellular component
cell junction Blast cellular component
cytoplasmic part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
enzyme binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

34 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 117 9.58e-31
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 69.3 1.42e-13
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 117 9.58e-31
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 69.3 1.42e-13
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 117 9.58e-31
fibrillar center Hs cellular component 117 5.04e-31
nucleic acid binding Hs molecular function 117 5.04e-31
DNA binding Hs molecular function 117 5.04e-31
chromatin binding Hs molecular function 69.3 1.42e-13
double-stranded DNA binding Hs molecular function 117 9.58e-31
single-stranded DNA binding Hs molecular function 117 9.58e-31
transcription factor activity, sequence-specific DNA binding Hs molecular function 117 9.58e-31
transcription corepressor activity Hs molecular function 117 9.58e-31
RNA binding Hs molecular function 117 5.04e-31
mRNA 3'-UTR binding Hs molecular function 117 9.58e-31
protein binding Hs molecular function 117 9.58e-31
extracellular region Hs cellular component 69.3 1.42e-13
nucleus Hs cellular component 117 5.04e-31
nucleoplasm Hs cellular component 69.3 1.42e-13
U12-type spliceosomal complex Hs cellular component 69.3 1.42e-13
cytoplasm Hs cellular component 117 5.04e-31
cytosol Hs cellular component 117 9.58e-31
polysome Hs cellular component 117 9.58e-31
bicellular tight junction Hs cellular component 117 9.58e-31
cytoplasmic stress granule Hs cellular component 69.3 1.42e-13
Rho GTPase binding Hs molecular function 117 9.58e-31
intracellular ribonucleoprotein complex Hs cellular component 117 9.58e-31
nuclear membrane Hs cellular component 69.3 1.42e-13
intracellular membrane-bounded organelle Hs cellular component 69.3 1.42e-13
perinuclear region of cytoplasm Hs cellular component 117 9.58e-31
GTPase binding Hs molecular function 69.3 1.42e-13
extracellular exosome Hs cellular component 69.3 1.42e-13
CRD-mediated mRNA stability complex Hs cellular component 69.3 1.42e-13
histone pre-mRNA 3'end processing complex Hs cellular component 69.3 1.42e-13

GO (InterProScan)

3 results

GO Term Analysis Type e-value
nucleic acid binding Pfam molecular function 1.7E-18
DNA binding Pfam molecular function 1.7E-18
regulation of transcription, DNA-templated Pfam biological process 1.7E-18