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GENE CARD

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Gene Card

Best human hits

SLC30A9; XPA

Species

P.mammillata

Unique Gene ID

Phmamm.g00004482

Gene Model ID

Phmamm.CG.MTP2014.S161.g04482

Location

S161:110112..113579

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S161.g04482.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

20 results

AHC0AAA18YC19

Plate: Plate_18_C19

AHC0AAA18YK17

Plate: Plate_18_K17

AHC0AAA4YI15

Plate: Plate_4_I15

AHC0AAA28YF19

Plate: Plate_28_F19

AHC0AAA38YG16

Plate: Plate_38_G16

AHC0AAA44YB24

Plate: Plate_44_B24

AHC0AAA45YL19

Plate: Plate_45_L19

AHC0AAA108YD19

Plate: Plate_108_D19

AHC0AAA114YE02

Plate: Plate_114_E02

AHC0AAA139YF03

Plate: Plate_139_F03

AHC0AAA153YP05

Plate: Plate_153_P05

AHC0AAA160YD17

Plate: Plate_160_D17

AHC0AAA167YN06

Plate: Plate_167_N06

AHC0AAA171YK11

Plate: Plate_171_K11

AHC0AAA171YM13

Plate: Plate_171_M13

AHC0AAA174YI13

Plate: Plate_174_I13

AHC0AAA248YP22

Plate: Plate_248_P22

AHC0AAA255YB01

Plate: Plate_255_B01

AHC0AAA269YK15

Plate: Plate_269_K15

AHC0AAA38YG14

Plate: Plate_38_G14

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
Cation_efflux_TMD_sf SUPERFAMILY Cation efflux transmembrane domain superfamily
Cation_efflux TIGRFAM Cation efflux protein
Cation_efflux Pfam Cation efflux protein
DNA-bd_dom_put_sf SUPERFAMILY Putative DNA-binding domain superfamily
Cation_efflux_TMD_sf Gene3D Cation efflux transmembrane domain superfamily
XPA_sf Gene3D XPA domain superfamily

GOSlim

33 results

GO Term Annotation Origin Type
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
DNA binding Blast molecular function
chromatin binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
protein binding Blast molecular function
nucleus Orthology cellular component
nucleoplasm Blast cellular component
cytoplasm Orthology cellular component
endoplasmic reticulum Orthology cellular component
cytoskeleton Orthology cellular component
DNA repair Orthology biological process
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
ion transport Orthology biological process
cation transport Orthology biological process
membrane Orthology cellular component
integral component of membrane Orthology cellular component
cytoplasmic vesicle Orthology cellular component
protein homodimerization activity Blast molecular function
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
metal ion binding Blast molecular function
transmembrane transport Orthology biological process
metal ion transport Orthology biological process
cellular process Orthology biological process
cell Orthology cellular component
receptor binding Orthology molecular function
transcription factor binding Orthology molecular function
transcription coactivator activity Orthology molecular function
nuclear part Blast cellular component
macromolecular complex Blast cellular component
nucleoplasm part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
extracellular region part Blast cellular component

GO (Orthology)

23 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
chromatin binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
nucleus Hs cellular component
cytoplasm Hs cellular component
endoplasmic reticulum Hs cellular component
cytoskeleton Hs cellular component
nucleotide-excision repair Hs biological process
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
ion transport Hs biological process
cation transport Hs biological process
zinc II ion transport Hs biological process
cellular zinc ion homeostasis Hs biological process
cation transmembrane transporter activity Hs molecular function
membrane Hs cellular component
integral component of membrane Hs cellular component
ligand-dependent nuclear receptor binding Hs molecular function
ligand-dependent nuclear receptor transcription coactivator activity Hs molecular function
cytoplasmic vesicle Hs cellular component
positive regulation of transcription from RNA polymerase II promoter Hs biological process
transmembrane transport Hs biological process
cation transmembrane transport Hs biological process

GO (Blast)

23 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleotide-excision repair factor 1 complex Hs cellular component 39.7 0.002
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 445 7.69e-153
DNA binding Hs molecular function 39.7 0.002
chromatin binding Hs molecular function 445 7.69e-153
damaged DNA binding Hs molecular function 39.7 0.002
transcription factor activity, sequence-specific DNA binding Hs molecular function 445 7.69e-153
protein binding Hs molecular function 39.7 0.002
nucleus Hs cellular component 445 7.69e-153
nucleoplasm Hs cellular component 39.7 0.002
DNA replication factor A complex Hs cellular component 39.7 0.002
cytoplasm Hs cellular component 445 7.69e-153
endoplasmic reticulum Hs cellular component 445 7.69e-153
cytoskeleton Hs cellular component 445 7.69e-153
cation transmembrane transporter activity Hs molecular function 445 7.69e-153
membrane Hs cellular component 445 7.69e-153
integral component of membrane Hs cellular component 445 7.69e-153
ligand-dependent nuclear receptor binding Hs molecular function 445 7.69e-153
protein domain specific binding Hs molecular function 39.7 0.002
ligand-dependent nuclear receptor transcription coactivator activity Hs molecular function 445 7.69e-153
cytoplasmic vesicle Hs cellular component 445 7.69e-153
protein homodimerization activity Hs molecular function 39.7 0.002
intercellular bridge Hs cellular component 39.7 0.002
metal ion binding Hs molecular function 39.7 0.002

GO (InterProScan)

4 results

GO Term Analysis Type e-value
cation transport TIGRFAM biological process 8.8E-30
cation transmembrane transporter activity PANTHER molecular function 5.8E-168
integral component of membrane TIGRFAM cellular component 8.8E-30
transmembrane transport TIGRFAM biological process 8.8E-30