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GENE CARD

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Gene Card

Best human hits

FAF1; FAF2; UBXN8

Species

P.mammillata

Unique Gene ID

Phmamm.g00004465

Gene Model ID

Phmamm.CG.MTP2014.S160.g04465

Location

S160:165635..184869

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S160.g04465.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

15 results

AHC0AAA39YO22

Plate: Plate_39_O22

AHC0AAA44YP02

Plate: Plate_44_P02

AHC0AAA68YN15

Plate: Plate_68_N15

AHC0AAA74YF07

Plate: Plate_74_F07

AHC0AAA140YA19

Plate: Plate_140_A19

AHC0AAA99YI09

Plate: Plate_99_I09

AHC0AAA194YD12

Plate: Plate_194_D12

AHC0AAA203YO22

Plate: Plate_203_O22

AHC0AAA221YK15

Plate: Plate_221_K15

AHC0AAA223YK17

Plate: Plate_223_K17

AHC0AAA234YL21

Plate: Plate_234_L21

AHC0AAA257YC18

Plate: Plate_257_C18

AHC0AAA258YB21

Plate: Plate_258_B21

AHC0AAA261YE15

Plate: Plate_261_E15

AHC0AAA39YA20

Plate: Plate_39_A20

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
UAS SMART UAS
Thioredoxin-like_sf SUPERFAMILY Thioredoxin-like superfamily
UBX_dom ProSiteProfiles UBX domain
Ubiquitin-like_domsf SUPERFAMILY Ubiquitin-like domain superfamily
UBX_dom SMART UBX domain
UBX_dom Pfam UBX domain

GOSlim

38 results

GO Term Annotation Origin Type
nucleic acid binding Blast molecular function
protein binding Orthology molecular function
extracellular region Orthology cellular component
nucleus Blast cellular component
nuclear envelope Blast cellular component
nucleoplasm Blast cellular component
nucleolus Blast cellular component
cytoplasm Orthology cellular component
endoplasmic reticulum Orthology cellular component
endoplasmic reticulum membrane Orthology cellular component
cytosol Blast cellular component
membrane Blast cellular component
integral component of membrane Blast cellular component
protein kinase binding Blast molecular function
ubiquitin protein ligase binding Orthology molecular function
perinuclear region of cytoplasm Blast cellular component
intracellular non-membrane-bounded organelle Orthology cellular component
response to stress Orthology biological process
response to organic substance Orthology biological process
cellular response to stress Orthology biological process
proteolysis Orthology biological process
intracellular protein transport Orthology biological process
macromolecular complex Orthology cellular component
organelle organization Orthology biological process
enzyme binding Orthology molecular function
cytoplasmic vesicle Orthology cellular component
lysosome Orthology cellular component
vacuolar part Orthology cellular component
endomembrane system Orthology cellular component
intracellular organelle lumen Orthology cellular component
regulation of catalytic activity Orthology biological process
hydrolase activity Orthology molecular function
enzyme regulator activity Orthology molecular function
RNA metabolic process Blast biological process
protein kinase activity Blast molecular function
regulation of cellular metabolic process Blast biological process
plasma membrane part Blast cellular component
transcription factor binding Blast molecular function

GO (Orthology)

16 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
protein binding Hs molecular function
extracellular region Hs cellular component
cytoplasm Hs cellular component
endoplasmic reticulum Hs cellular component
lipid droplet Hs cellular component
response to unfolded protein Hs biological process
ubiquitin-dependent ERAD pathway Hs biological process
retrograde protein transport, ER to cytosol Hs biological process
ubiquitin protein ligase binding Hs molecular function
VCP-NPL4-UFD1 AAA ATPase complex Hs cellular component
lipid particle organization Hs biological process
lipase binding Hs molecular function
azurophil granule lumen Hs cellular component
negative regulation of catalytic activity Hs biological process
ubiquitin binding Hs molecular function
lipase inhibitor activity Hs molecular function

GO (Blast)

29 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleic acid binding Hs molecular function 51.2 3.73e-07
RNA-DNA hybrid ribonuclease activity Hs molecular function 51.2 3.73e-07
protein binding Hs molecular function 271 2.63e-87
extracellular region Hs cellular component 271 2.63e-87
nucleus Hs cellular component 90.9 9.70e-20
nuclear envelope Hs cellular component 90.9 9.70e-20
nucleoplasm Hs cellular component 51.2 3.73e-07
nucleolus Hs cellular component 51.2 3.73e-07
cytoplasm Hs cellular component 271 2.63e-87
endoplasmic reticulum Hs cellular component 271 2.63e-87
endoplasmic reticulum membrane Hs cellular component 51.2 3.73e-07
lipid droplet Hs cellular component 271 2.63e-87
cytosol Hs cellular component 90.9 9.70e-20
membrane Hs cellular component 90.9 9.70e-20
integral component of membrane Hs cellular component 90.9 9.70e-20
protein kinase regulator activity Hs molecular function 90.9 9.70e-20
protein kinase binding Hs molecular function 90.9 9.70e-20
protein domain specific binding Hs molecular function 90.9 9.70e-20
integral component of endoplasmic reticulum membrane Hs cellular component 51.2 3.73e-07
heat shock protein binding Hs molecular function 90.9 9.70e-20
CD95 death-inducing signaling complex Hs cellular component 90.9 9.70e-20
ubiquitin protein ligase binding Hs molecular function 271 2.63e-87
VCP-NPL4-UFD1 AAA ATPase complex Hs cellular component 271 2.63e-87
lipase binding Hs molecular function 271 2.63e-87
azurophil granule lumen Hs cellular component 271 2.63e-87
ubiquitin binding Hs molecular function 271 2.63e-87
perinuclear region of cytoplasm Hs cellular component 90.9 9.70e-20
NF-kappaB binding Hs molecular function 90.9 9.70e-20
lipase inhibitor activity Hs molecular function 271 2.63e-87

GO (InterProScan)

1 result

GO Term Analysis Type e-value
protein binding Pfam molecular function 2.9E-11