Aniseed - Gene card

Gene 'Phmamm.CG.MTP2014.S1...'

Gene Card

Best human hits

SDHB

Species

P.mammillata

Unique Gene ID

Phmamm.g00004362

Gene Model ID

Phmamm.CG.MTP2014.S156.g04362

Location

S156:32011..37455

Transcript Models and Sequences

Phmamm.CG.MTP2014.S156.g04362.01.t
Phmamm.CG.MTP2014.S156.g04362.02.t
Phmamm.CG.MTP2014.S156.g04362.03.t
Phmamm.CG.MTP2014.S156.g04362.04.t
Phmamm.CG.MTP2014.S156.g04362.05.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

7 results

AHC0AAA220YN19

Plate: Plate_220_N19

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

11 results

IPR Term	Analysis	Definition
2Fe-2S_ferredoxin-type	CDD	2Fe-2S ferredoxin-type iron-sulfur binding domain
2Fe-2S_ferredoxin-type	ProSiteProfiles	2Fe-2S ferredoxin-type iron-sulfur binding domain
Beta-grasp_dom_sf	Gene3D	Beta-grasp domain superfamily
Helical_ferredxn	Gene3D	Alpha-helical ferredoxin
4Fe4S_Fe-S-bd	ProSiteProfiles	4Fe-4S ferredoxin-type, iron-sulphur binding domain
Succ_DH/fum_Rdtase_Fe-S	TIGRFAM	Succinate dehydrogenase/fumarate reductase iron-sulphur protein
2Fe2S_fd_BS	ProSitePatterns	2Fe-2S ferredoxin, iron-sulphur binding site
Succ_DH/fum_Rdtase_N	Pfam	Succinate dehydogenase/fumarate reductase N-terminal
2Fe-2S_ferredoxin-like_sf	SUPERFAMILY	2Fe-2S ferredoxin-like superfamily
Helical_ferredxn	SUPERFAMILY	Alpha-helical ferredoxin
4Fe4S_Fe_S_CS	ProSitePatterns	4Fe-4S ferredoxin, iron-sulphur binding, conserved site

GOSlim

17 results

GO Term	Annotation Origin	Type
protein binding	Orthology	molecular function
nucleoplasm	Orthology	cellular component
mitochondrion	Orthology	cellular component
mitochondrial inner membrane	Orthology	cellular component
plasma membrane	Orthology	cellular component
membrane	Orthology	cellular component
mitochondrial membrane	Orthology	cellular component
metal ion binding	Orthology	molecular function
oxidation-reduction process	Orthology	biological process
extracellular exosome	Orthology	cellular component
membrane part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
cellular metabolic process	Orthology	biological process
organic substance metabolic process	Orthology	biological process
catalytic activity	Orthology	molecular function
intracellular part	Orthology	cellular component
cofactor binding	Orthology	molecular function

GO (Orthology)

25 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
protein binding	Hs	molecular function
nucleoplasm	Hs	cellular component
mitochondrion	Hs	cellular component
mitochondrial inner membrane	Hs	cellular component
mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	Hs	cellular component
plasma membrane	Hs	cellular component
tricarboxylic acid cycle	Hs	biological process
succinate metabolic process	Hs	biological process
succinate dehydrogenase (ubiquinone) activity	Hs	molecular function
electron carrier activity	Hs	molecular function
aerobic respiration	Hs	biological process
membrane	Hs	cellular component
oxidoreductase activity	Hs	molecular function
electron transport chain	Hs	biological process
respiratory electron transport chain	Hs	biological process
mitochondrial membrane	Hs	cellular component
respiratory chain complex II	Hs	cellular component
metal ion binding	Hs	molecular function
ubiquinone binding	Hs	molecular function
iron-sulfur cluster binding	Hs	molecular function
2 iron, 2 sulfur cluster binding	Hs	molecular function
3 iron, 4 sulfur cluster binding	Hs	molecular function
4 iron, 4 sulfur cluster binding	Hs	molecular function
oxidation-reduction process	Hs	biological process
extracellular exosome	Hs	cellular component

GO (Blast)

19 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
protein binding	Hs	molecular function	412	9.60e-147
nucleoplasm	Hs	cellular component	412	9.60e-147
mitochondrion	Hs	cellular component	412	9.60e-147
mitochondrial inner membrane	Hs	cellular component	412	9.60e-147
mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	Hs	cellular component	412	9.60e-147
plasma membrane	Hs	cellular component	412	9.60e-147
succinate dehydrogenase (ubiquinone) activity	Hs	molecular function	412	9.60e-147
electron carrier activity	Hs	molecular function	412	9.60e-147
membrane	Hs	cellular component	412	9.60e-147
oxidoreductase activity	Hs	molecular function	412	9.60e-147
mitochondrial membrane	Hs	cellular component	412	9.60e-147
respiratory chain complex II	Hs	cellular component	412	9.60e-147
metal ion binding	Hs	molecular function	412	9.60e-147
ubiquinone binding	Hs	molecular function	412	9.60e-147
iron-sulfur cluster binding	Hs	molecular function	412	9.60e-147
2 iron, 2 sulfur cluster binding	Hs	molecular function	412	9.60e-147
3 iron, 4 sulfur cluster binding	Hs	molecular function	412	9.60e-147
4 iron, 4 sulfur cluster binding	Hs	molecular function	412	9.60e-147
extracellular exosome	Hs	cellular component	412	9.60e-147

GO (InterProScan)

6 results

GO Term	Analysis	Type	e-value
tricarboxylic acid cycle	TIGRFAM	biological process	6.9E-84
electron carrier activity	Pfam	molecular function	7.0E-33
oxidoreductase activity	TIGRFAM	molecular function	6.9E-84
iron-sulfur cluster binding	Gene3D	molecular function	3.0E-61
2 iron, 2 sulfur cluster binding	ProSitePatterns	molecular function
oxidation-reduction process	TIGRFAM	biological process	6.9E-84