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GENE CARD

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Gene Card

Best human hits

RIF1

Species

P.mammillata

Unique Gene ID

Phmamm.g00004019

Gene Model ID

Phmamm.CG.MTP2014.S138.g04019

Location

S138:134627..151929

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S138.g04019.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

35 results

AHC0AAA12YC10

Plate: Plate_12_C10

AHC0AAA15YH04

Plate: Plate_15_H04

AHC0AAA45YL24

Plate: Plate_45_L24

AHC0AAA48YL12

Plate: Plate_48_L12

AHC0AAA79YB06

Plate: Plate_79_B06

AHC0AAA120YG18

Plate: Plate_120_G18

AHC0AAA122YL23

Plate: Plate_122_L23

AHC0AAA133YD07

Plate: Plate_133_D07

AHC0AAA140YI08

Plate: Plate_140_I08

AHC0AAA140YP17

Plate: Plate_140_P17

AHC0AAA141YE10

Plate: Plate_141_E10

AHC0AAA147YC18

Plate: Plate_147_C18

AHC0AAA149YJ14

Plate: Plate_149_J14

AHC0AAA84YI05

Plate: Plate_84_I05

AHC0AAA87YL18

Plate: Plate_87_L18

AHC0AAA99YD19

Plate: Plate_99_D19

AHC0AAA99YF14

Plate: Plate_99_F14

AHC0AAA133YD05

Plate: Plate_133_D05

AHC0AAA147YE20

Plate: Plate_147_E20

AHC0AAA158YO15

Plate: Plate_158_O15

AHC0AAA158YP01

Plate: Plate_158_P01

AHC0AAA165YA15

Plate: Plate_165_A15

AHC0AAA181YN22

Plate: Plate_181_N22

AHC0AAA187YP01

Plate: Plate_187_P01

AHC0AAA190YB04

Plate: Plate_190_B04

AHC0AAA194YM22

Plate: Plate_194_M22

AHC0AAA195YG24

Plate: Plate_195_G24

AHC0AAA198YP19

Plate: Plate_198_P19

AHC0AAA203YN01

Plate: Plate_203_N01

AHC0AAA206YC22

Plate: Plate_206_C22

AHC0AAA221YB20

Plate: Plate_221_B20

AHC0AAA251YE06

Plate: Plate_251_E06

AHC0AAA254YB11

Plate: Plate_254_B11

AHC0AAA257YD07

Plate: Plate_257_D07

AHC0AAA269YD08

Plate: Plate_269_D08

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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No Phylogeny Tree for this Gene.
Gene Annotations

InterPro

3 results

IPR Term Analysis Definition
Rif1 PANTHER Telomere-associated protein Rif1
Rif1_N Pfam Telomere-associated protein Rif1, N-terminal
ARM-type_fold SUPERFAMILY Armadillo-type fold

GOSlim

14 results

GO Term Annotation Origin Type
binding Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
cytoskeleton Blast cellular component
plasma membrane Blast cellular component
nuclear body Blast cellular component
nuclear membrane Blast cellular component
intracellular organelle part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
nuclear lumen Blast cellular component
cytoskeletal part Blast cellular component
microtubule cytoskeleton Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

18 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
chromosome, telomeric region Hs cellular component 170 4.11e-42
nuclear chromatin Hs cellular component 170 4.11e-42
condensed chromosome Hs cellular component 170 4.11e-42
female pronucleus Hs cellular component 170 4.11e-42
male pronucleus Hs cellular component 170 4.11e-42
binding Hs molecular function 170 4.11e-42
protein binding Hs molecular function 170 4.11e-42
nucleus Hs cellular component 170 4.11e-42
nucleoplasm Hs cellular component 170 4.11e-42
chromosome Hs cellular component 170 4.11e-42
cytoplasm Hs cellular component 170 4.11e-42
spindle Hs cellular component 170 4.11e-42
cytoskeleton Hs cellular component 170 4.11e-42
plasma membrane Hs cellular component 170 4.11e-42
nuclear body Hs cellular component 170 4.11e-42
nuclear membrane Hs cellular component 170 4.11e-42
site of double-strand break Hs cellular component 170 4.11e-42
spindle midzone Hs cellular component 170 4.11e-42

GO (InterProScan)

1 result

GO Term Analysis Type e-value
binding SUPERFAMILY molecular function 5.35E-12