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GENE CARD

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Gene Card

Best human hits

PHF21A

Species

P.mammillata

Unique Gene ID

Phmamm.g00003710

Gene Model ID

Phmamm.CG.MTP2014.S124.g03710

Location

S124:107714..112665

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S124.g03710.01.t
Phmamm.CG.MTP2014.S124.g03710.02.t
Phmamm.CG.MTP2014.S124.g03710.03.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

13 results

AHC0AAA43YK08

Plate: Plate_43_K08

AHC0AAA45YG12

Plate: Plate_45_G12

AHC0AAA52YF23

Plate: Plate_52_F23

AHC0AAA52YL18

Plate: Plate_52_L18

AHC0AAA67YK14

Plate: Plate_67_K14

AHC0AAA80YC18

Plate: Plate_80_C18

AHC0AAA133YM20

Plate: Plate_133_M20

AHC0AAA92YB18

Plate: Plate_92_B18

AHC0AAA94YO19

Plate: Plate_94_O19

AHC0AAA133YM18

Plate: Plate_133_M18

AHC0AAA198YA03

Plate: Plate_198_A03

AHC0AAA198YP16

Plate: Plate_198_P16

AHC0AAA92YD20

Plate: Plate_92_D20

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
Znf_FYVE_PHD SUPERFAMILY Zinc finger, FYVE/PHD-type
Znf_PHD SMART Zinc finger, PHD-type
Znf_PHD-finger ProSiteProfiles Zinc finger, PHD-finger
Zinc_finger_PHD-type_CS ProSitePatterns Zinc finger, PHD-type, conserved site
Znf_PHD-finger Pfam Zinc finger, PHD-finger
Znf_RING/FYVE/PHD Gene3D Zinc finger, RING/FYVE/PHD-type

GOSlim

13 results

GO Term Annotation Origin Type
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
DNA binding Blast molecular function
chromatin binding Blast molecular function
transcription cofactor activity Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
metal ion binding Blast molecular function
nucleoplasm part Blast cellular component
macromolecular complex Blast cellular component
organelle organization Blast biological process
hydrolase activity Blast molecular function
cellular protein modification process Blast biological process

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

12 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
histone deacetylase complex Hs cellular component 57.4 1.01e-08
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 57.4 1.01e-08
DNA binding Hs molecular function 57.4 1.01e-08
chromatin binding Hs molecular function 57.4 1.01e-08
transcription cofactor activity Hs molecular function 57.4 1.01e-08
histone deacetylase activity Hs molecular function 57.4 1.01e-08
protein binding Hs molecular function 57.4 1.01e-08
nucleus Hs cellular component 57.4 1.01e-08
nucleoplasm Hs cellular component 57.4 1.01e-08
histone binding Hs molecular function 57.4 1.01e-08
metal ion binding Hs molecular function 57.4 1.01e-08
DNA repair complex Hs cellular component 57.4 1.01e-08

GO (InterProScan)

No result

GO Term Analysis Type e-value

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