Login
Help

GENE CARD

Submit your Data

Gene Card

Best human hits

POLR1C; POLR2C

Species

P.mammillata

Unique Gene ID

Phmamm.g00002413

Gene Model ID

Phmamm.CG.MTP2014.S68.g02413

Location

S68:106810..107833

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S68.g02413.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

25 results

AHC0AAA14YJ21

Plate: Plate_14_J21

AHC0AAA8YN03

Plate: Plate_8_N03

AHC0AAA8YO19

Plate: Plate_8_O19

AHC0AAA28YF15

Plate: Plate_28_F15

AHC0AAA35YO11

Plate: Plate_35_O11

AHC0AAA39YK04

Plate: Plate_39_K04

AHC0AAA57YN08

Plate: Plate_57_N08

AHC0AAA59YC14

Plate: Plate_59_C14

AHC0AAA61YF14

Plate: Plate_61_F14

AHC0AAA106YM24

Plate: Plate_106_M24

AHC0AAA128YN24

Plate: Plate_128_N24

AHC0AAA140YM05

Plate: Plate_140_M05

AHC0AAA145YA10

Plate: Plate_145_A10

AHC0AAA145YL01

Plate: Plate_145_L01

AHC0AAA145YO22

Plate: Plate_145_O22

AHC0AAA87YI03

Plate: Plate_87_I03

AHC0AAA96YP15

Plate: Plate_96_P15

AHC0AAA106YM22

Plate: Plate_106_M22

AHC0AAA169YM24

Plate: Plate_169_M24

AHC0AAA196YK06

Plate: Plate_196_K06

AHC0AAA210YJ08

Plate: Plate_210_J08

AHC0AAA220YD17

Plate: Plate_220_D17

AHC0AAA251YL21

Plate: Plate_251_L21

AHC0AAA252YL14

Plate: Plate_252_L14

AHC0AAA39YK02

Plate: Plate_39_K02

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree

 Click here to see the tree inference method

Gene Annotations

InterPro

9 results

IPR Term Analysis Definition
RBP11-like SUPERFAMILY RNA polymerase, RBP11-like subunit
DNA-dir_RNA_pol_RpoA/D/Rpb3 Pfam DNA-directed RNA polymerase, RpoA/D/Rpb3-type
DNA-dir_RNA_pol_30-40kDasu_CS ProSitePatterns DNA-directed RNA polymerase, 30-40kDa subunit, conserved site
RNApol_insert_sf SUPERFAMILY DNA-directed RNA polymerase, insert domain superfamily
DNA-dir_RNA_pol_insert Pfam DNA-directed RNA polymerase, insert domain
DNA-dir_RNA_pol_RpoA/D/Rpb3 SMART DNA-directed RNA polymerase, RpoA/D/Rpb3-type
RNAPI/II_AC40 CDD DNA-directed RNA polymerases I and III subunit AC40
RNApol_insert_sf Gene3D DNA-directed RNA polymerase, insert domain superfamily
RNAPI/II_AC40 PANTHER DNA-directed RNA polymerases I and III subunit AC40

GOSlim

19 results

GO Term Annotation Origin Type
DNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Blast cellular component
cytosol Orthology cellular component
transcription, DNA-templated Orthology biological process
transcription from RNA polymerase II promoter Blast biological process
microtubule cytoskeleton Blast cellular component
protein dimerization activity Orthology molecular function
nuclear lumen Orthology cellular component
transferase activity, transferring phosphorus-containing groups Orthology molecular function
intracellular non-membrane-bounded organelle Orthology cellular component
RNA biosynthetic process Orthology biological process
nuclear part Orthology cellular component
macromolecular complex Orthology cellular component
nucleolus Orthology cellular component
positive regulation of gene expression Orthology biological process
nucleoplasm part Blast cellular component

GO (Orthology)

17 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
RNA polymerase I activity Hs molecular function
RNA polymerase III activity Hs molecular function
DNA binding Hs molecular function
DNA-directed 5'-3' RNA polymerase activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
DNA-directed RNA polymerase III complex Hs cellular component
DNA-directed RNA polymerase I complex Hs cellular component
cytosol Hs cellular component
transcription, DNA-templated Hs biological process
transcription from RNA polymerase I promoter Hs biological process
termination of RNA polymerase I transcription Hs biological process
transcription from RNA polymerase III promoter Hs biological process
positive regulation of type I interferon production Hs biological process
positive regulation of gene expression, epigenetic Hs biological process
protein dimerization activity Hs molecular function

GO (Blast)

15 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
RNA polymerase I activity Hs molecular function 435 5.78e-154
RNA polymerase II activity Hs molecular function 100 2.32e-24
RNA polymerase III activity Hs molecular function 435 5.78e-154
DNA binding Hs molecular function 435 5.78e-154
DNA-directed 5'-3' RNA polymerase activity Hs molecular function 435 5.78e-154
protein binding Hs molecular function 435 5.78e-154
nucleus Hs cellular component 435 5.78e-154
nucleoplasm Hs cellular component 435 5.78e-154
DNA-directed RNA polymerase II, core complex Hs cellular component 100 2.32e-24
DNA-directed RNA polymerase III complex Hs cellular component 435 5.78e-154
DNA-directed RNA polymerase I complex Hs cellular component 435 5.78e-154
cytoplasm Hs cellular component 100 2.32e-24
cytosol Hs cellular component 435 5.78e-154
microtubule cytoskeleton Hs cellular component 100 2.32e-24
protein dimerization activity Hs molecular function 435 5.78e-154

GO (InterProScan)

4 results

GO Term Analysis Type e-value
DNA binding ProSitePatterns molecular function
DNA-directed 5'-3' RNA polymerase activity SMART molecular function 3.1E-96
transcription, DNA-templated SMART biological process 3.1E-96
protein dimerization activity SUPERFAMILY molecular function 1.75E-31